Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq3544 605 3e-168 seq3157 385 5e-102 >seq3544 Length=2542 Score = 605 bits (670), Expect = 3e-168 Identities = 664/881 (75%), Gaps = 4/881 (0%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 |||||||||||| | || |||||| || || | ||| | |||||||||||||| ||| Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 ||||| || | | |||| || || || || ||| | | || || ||||| ||| Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTACTGTATTTATTATTGGTTTTATTGCTGCACCT 1730 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 || || ||||| || || ||| | || ||||| | |||||||| ||||| ||||||||| Sbjct 1731 CCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAAC 1790 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 || || |||||||| | |||| ||||||| || || || | |||||||| || || Sbjct 1791 ATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAATT 1850 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || | | ||||| ||||| |||||||| ||||||||||| ||| | || Sbjct 1851 TGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGTT 1910 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | ||| || | || || || | || || |||||| | |||||||||| || | | | Sbjct 1911 TGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCGT 1970 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 |||| ||| | |||||||| |||||| || ||||| |||||| |||| || |||| Sbjct 1971 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGCT 2030 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 |||||| || | || || ||||||| ||||| || |||||||||||||| ||||||| Sbjct 2031 GTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTATT 2090 Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774 || ||||| ||||| |||||| | || |||||||||||||| ||||| || |||||||| Sbjct 2091 TCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 2150 Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT--AGTCTCTTCAGTGCAATGCACG 72832 ||||| ||| ||||| || ||| | || |||||| | | | ||| ||| ||||| | Sbjct 2151 TTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTC--TGCTATGCATG 2208 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892 ||||| | || ||||| ||||| || | || || || || ||||| | ||| | Sbjct 2209 GTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTG 2268 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 | || || ||||| |||||||||||||| || ||||| ||||| ||||| || ||||||| Sbjct 2269 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCG 2328 Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012 || | ||||| ||||| ||||| || || |||||||||||||||||||||||||| | | Sbjct 2329 GTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAG 2388 Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072 ||| | ||||| || ||| | ||||| || | | ||||| | || |||||||| | Sbjct 2389 CTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 2448 Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCA 73113 || | ||||| ||||||||||||||||||||||||||| || Sbjct 2449 ACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCA 2489 >seq3157 Length=2513 Score = 385 bits (426), Expect = 5e-102 Identities = 623/895 (70%), Gaps = 31/895 (3%) Strand=Plus/Plus Query 73361 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 73420 ||||||||| || |||| |||||| || | || || || |||||| | || |||||| Sbjct 1637 TGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGGTCT 1696 Query 73421 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 73480 || | |||||||| ||| |||||| || ||| | || | ||||| ||||||||| Sbjct 1697 GGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACTACA 1756 Query 73481 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTT 73540 || || || || ||||| || ||||| | || ||||||| | || || |||||| Sbjct 1757 TTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAATTTT 1816 Query 73541 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGG 73600 |||||||| ||||| || ||||| | | || |||||||||| | |||| ||||||||| Sbjct 1817 TTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTTTGG 1876 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 || || || |||||||| ||| || || |||| ||||||||| || || ||| ||| Sbjct 1877 GGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCTTTT 1936 Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 73720 |||| | ||||| ||||| || || ||||| |||||| | || ||||| |||||| Sbjct 1937 ACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATTGCA 1996 Query 73721 GGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTC 73780 | || || |||||||| |||||| | || |||||||| || || | || Sbjct 1997 CGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCTTTT- 2055 Query 73781 ACGAGCATC---TTTC-TAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTC 73836 | || |||| |||| || || ||||| || | ||||||| || |||||| Sbjct 2056 ---TGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAG 2112 Query 73837 ATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAAC 73896 || ||||| ||||| || || |||| |||||||| | || ||||| || || || Sbjct 2113 TTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGAC 2172 Query 73897 TCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGC 73956 | ||||||||||||||||||||||| || ||| | | ||||| ||| | || | ||| Sbjct 2173 ATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGC 2232 Query 73957 CATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGG 74016 || ||||||||||||||| | || || | | |||||| | || || Sbjct 2233 AATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGA------------GATGG 2280 Query 74017 TAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAG 74076 | ||| |||||| | || || | || ||||| | |||||| || ||| Sbjct 2281 T---------GCTAATACTTTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTC 2331 Query 74077 TATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAG 74136 | | | || || || | || ||||| || || |||||| |||| ||||| || ||| | Sbjct 2332 TTTTGTAACAGCAAATCGTTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACG 2391 Query 74137 ATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGG 74196 | ||||||||| ||||||||||||| || || | ||| | |||| |||| || Sbjct 2392 TTGGTTACACTTCTTTATGTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGG 2451 Query 74197 TATCGTAGGTCTAGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGAT 74250 | | || ||| ||||| |||| ||| | ||||| || || ||||| ||||| || Sbjct 2452 TGTAGTTGGTTTAGCA-TTAAATTTACGTGCATATGATTTCGTATCACAAGAAAT 2505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572847455481080