Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2126 136 5e-26 seq795 123 3e-22 seq3113 116 5e-20 seq413 104 3e-16 seq2812 102 1e-15 seq1200 102 1e-15 seq414 93.3 5e-13 >seq2126 Length=41412 Score = 136 bits (150), Expect = 5e-26 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1630082 CCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCCG 1630141 |||||||||| ||||| || |||||||| |||| ||||||||| |||||||||||| Sbjct 17170 CCGTGTCGTTGAAGACCCGCAGCATGGGGACGATGCCGTTGGAGGTGCCGTTGGTGCCGC 17111 Query 1630142 CCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGACT 1630201 | ||||| ||||| || ||| | |||||| || | ||||||||||| || |||| Sbjct 17110 GGATGTAGGAGCCGGTGGAGCGGATGTTGTGCATGGACAGCCCGATGCCGCCCGCGGACT 17051 Query 1630202 TGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||||| ||||||| || |||||||| |||||||| Sbjct 17050 TGGAGATGCAGGCGCACTCCTTCAGCGTGTCATAGATGCC 17011 Score = 127 bits (140), Expect = 2e-23 Identities = 136/177 (77%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 1627343 CGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACG 1627402 |||| || || || |||||||| |||||| |||||||||| |||| | ||| | Sbjct 20987 CGGTGAACTCCCCAGAGAGCACCCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGC 20928 Query 1627403 CCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCG 1627462 |||| |||||||||||||||| || | ||| ||||||||| | ||||| || |||| Sbjct 20927 ACTCGTTGTTGCCCAGGATCTGGCTGGTGGAGGCGGTGGGCATGGGGGCCACCAGCAGCG 20868 Query 1627463 AGTTGCGCAGGCCGTGCTGTCGAACTAG-CGCGCGCAGCGCGTCCCAGTCCCAGCGG 1627518 ||||||||| ||||||||| || | | | | |||||||| | ||||||||||||| Sbjct 20867 AGTTGCGCACGCCGTGCTG-CGCTATGGACTCACGCAGCGCCTGCCAGTCCCAGCGG 20812 >seq795 Length=15292 Score = 123 bits (136), Expect = 3e-22 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||||||||| |||||||| | ||||||| || ||| | | ||||||||| Sbjct 7504 GCCGCCAACTACCTGAACATCAAGTCCTTGCTCGACCTCACATGCCTGACGGTGGCCAAC 7563 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACGT 1592301 ||||||||||||||| ||||||||||||||||||||||||| ||||| |||| || Sbjct 7564 ATGATCAAGGGCAAGACGCCCGAGGAGATCCGCAAGACCTTCAACATTGAGTAAGT 7619 >seq3113 Length=7586 Score = 116 bits (128), Expect = 5e-20 Identities = 110/138 (80%), Gaps = 8/138 (6%) Strand=Plus/Plus Query 96654 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCT-GAGCGTGTGCTGCGCGCC 96712 ||||||||||| |||||||| |||||| ||||||||||||| | ||| ||| |||| ||| Sbjct 155 GCCGAGAACCTGATGATCGTGGACCTGCTGCGCAACGACCTGGGGCGGGTG-TGCGAGCC 213 Query 96713 CGGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTGCA 96772 |||||||| |||||| | |||||| |||||||| ||||||| |||| || Sbjct 214 GGGCAGCGTGCATGTGCCG------GGGCTGATGCAGATTGAGAGCTACGCCACCGTCCA 267 Query 96773 CCAGATGGTGACCACCGT 96790 |||||||||| |||| || Sbjct 268 CCAGATGGTGTCCACTGT 285 >seq413 Length=46773 Score = 104 bits (114), Expect = 3e-16 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 507703 CACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGA 507762 |||| | || |||||||| | || ||| |||||||||| |||||||| || ||||| Sbjct 45218 CACCTTCCGGCTCAACCTGTCGGTGACGTCGCCCTACAACGCGGACTTTGATGGGGACGA 45277 Query 507763 GATGAACCTGCACGTGCCCCAGTC---CGAGACGGCGCGCGCCGAGGTGACGCACACCAT 507819 ||||||| |||| ||||||||||| ||||| ||||||| ||||| | | | | ||| Sbjct 45278 GATGAACATGCATGTGCCCCAGTCGCACGAGA---CGCGCGCTGAGGTCAAGGAGATCAT 45334 Query 507820 GAGCGTGTCGCTCAAGACCGTGTCGCCGCAGG 507851 | ||| ||| || | |||||| ||||||| Sbjct 45335 GGCAGTGCCGCAGAACATCGTGTCACCGCAGG 45366 >seq2812 Length=2232 Score = 102 bits (112), Expect = 1e-15 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 732342 ACGCACGTCGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTC 732401 ||||| ||||||||||||| | || || || | ||||| |||||| | || ||| Sbjct 1914 ACGCATTGCGAGGTGCACCCGGCCATGATCCTGGGCGTGTGCGCCTCCATCGTGCCCTTC 1973 Query 732402 TCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 || ||||||||||| |||||||||||| ||||||| | ||||||||||||||| Sbjct 1974 CCCGACCACAACCAGTCGCCGCGCAACACCTACCAGTCCGCCATGGGCAAGCAG 2027 >seq1200 Length=20974 Score = 102 bits (112), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 869674 CCTCACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGAT 869733 || |||||| | || || ||||||||||||||||| || |||||||||| |||||| Sbjct 3987 CCGCACCTCGGGGACCTGCACCTCCTTCATGAACCGCACGCCCAGGTTCTCCAGCACGAT 3928 Query 869734 GCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT 869793 |||||| || || || || ||||| |||||| ||| ||||| |||| ||||| | Sbjct 3927 GCCGTCAGACGCCGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGCTTCTCGCCGTCGTT 3868 Query 869794 GAGCGACACCCAG---TGGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGC 869841 |||| | ||||| || || |||| || ||||| |||||||| || Sbjct 3867 CAGCGTCTCCCAGTCCTGCAC---GTCGCTGCCCAGGTCAACCTCCTCAGC 3820 Score = 86.0 bits (94), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||||| |||| ||||| ||||| | |||||||||||||||||| ||||||| |||| Sbjct 5245 TCGTTGCTGAAGGTCAGGCCCGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGCAG 5186 Query 869261 AAACTGC 869267 ||||||| Sbjct 5185 AAACTGC 5179 >seq414 Length=32458 Score = 93.3 bits (102), Expect = 5e-13 Identities = 136/193 (70%), Gaps = 12/193 (6%) Strand=Plus/Plus Query 512060 TTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACC------GACACCATG 512113 |||||||||| |||||| ||| |||||||| ||||||| | || | |||| Sbjct 6542 TTTGACGGCAGCTACGTGAACTACCGCCAC------CTGGCCAACCTGGTGGATAGCATG 6595 Query 512114 TGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGC 512173 | |||||| | | ||||| |||| ||||||||| ||||||||||||| || Sbjct 6596 ACGTACCGCGGCTACTTCATGGCCATCACACGCCACGGCATCAACCGCGCCGAGACGGGG 6655 Query 512174 TTCCTGTCGCGGGCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTT 512233 |||| | |||||| ||||| ||||| || |||||||| || ||||| || | Sbjct 6656 CCCCTGCACCAGGCCTCGTTCGAGGAGACGGTGGACATCCTGTTCAGGGCGGCCATCTAT 6715 Query 512234 GCCGAGACCGACA 512246 || ||||| |||| Sbjct 6716 GCAGAGACGGACA 6728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106839581842367