Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq947 122 8e-23 seq584 86.0 6e-12 seq583 84.2 2e-11 >seq947 Length=48402 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||||||| | || || || ||||| || || || ||||| || || || || | | Sbjct 31508 TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 31567 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 |||| | || | || || |||||||| ||||| || || || || || || || | Sbjct 31568 ACACCATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGC 31627 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 | || ||||||||||||| || ||||||||||| | | | | || | || || |||| Sbjct 31628 AGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACAACA 31687 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || ||||| || || || || ||||| |||| ||||||| ||| Sbjct 31688 TCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGGC 31734 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || ||||||||| | || || || || || || || || ||||| || || || | | Sbjct 32040 ATACAGATCTTTGTGAAGACCCTGACTGGCAAGACGATCACGCTGGAGGTGGAGTCGTCA 32099 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 32100 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 32159 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || |||||||||||| | | | | || | || || ||| Sbjct 32160 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCCGACTACAAC 32219 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| |||| ||||||| ||| Sbjct 32220 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGCCTGCGCGGTGGC 32267 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || || ||||| || || || | | Sbjct 33721 ATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCTTCA 33780 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 33781 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 33840 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || || |||||||||||| | | | || | ||||| ||| Sbjct 33841 CAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGGCTGATTACAAC 33900 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| |||| |||||||| ||| Sbjct 33901 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCTTGCGCGGTGGC 33948 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||| ||| | || || | ||||| || || || ||||| || || || || | | Sbjct 33264 TGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 33323 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 |||| | || | || || ||||| || ||||| || || || || || || || | Sbjct 33324 ACACTATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGC 33383 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 | || ||||||||||||| || ||||| || ||| | | | || | || || |||| Sbjct 33384 AGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACTACAACA 33443 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || ||||| || || || || ||||| |||| ||||||| ||| Sbjct 33444 TCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGGC 33490 >seq584 Length=13061 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||| ||| | || || || ||||| || || |||||||| || || || | | | Sbjct 155 TGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTGGAGGTGGAGTCGTCAG 96 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 |||| | || | || || ||||||||| ||||| || || || || || || || | Sbjct 95 ACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 36 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 | || ||||||| || || || |||||||||||| Sbjct 35 AGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAT 1 >seq583 Length=2907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| || || || || | || ||||| || || || ||||||| || || || Sbjct 2866 AAGATCCAGGATAAGGAGGGCACTCCCCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAG 2807 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||||||||| | | | | || | || || ||||| || ||||| || || || ||| Sbjct 2806 CAGCTGGAGGACGGGCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCAC 2747 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||| ||||||| ||| Sbjct 2746 CTGGTGCTGCGCCTGCGCGGCGGC 2723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449877067798280