Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1200 131 3e-24 seq2126 122 1e-21 seq2323 118 2e-20 seq2309 118 2e-20 seq2318 113 7e-19 seq2812 111 2e-18 seq1608 111 2e-18 seq795 111 2e-18 seq413 111 2e-18 seq2324 109 9e-18 seq1613 109 9e-18 seq1610 109 9e-18 seq1634 100 5e-15 seq3113 98.7 2e-14 >seq1200 Length=20974 Score = 131 bits (144), Expect = 3e-24 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 794498 TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGG 794557 || |||||||||| | |||||| || ||||| ||| | || |||||||| ||| ||| Sbjct 4636 TGGTGATCCACTTGAGCGCCCAGTCCGCCTTCTTCTTGACGACTGGCACCGTCTCGGTGG 4577 Query 794558 CGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGT 794617 || | |||||| ||| ||||||| | | |||||||| ||| | || | || || |||| Sbjct 4576 CGTGGAAGAGGCGGTTCTTCTCGGCAGAGTCCTTGATGTACGACTCCAGCAGCAGGGAGT 4517 Query 794618 AGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | |||| ||||||||||| || ||||| ||||||||||| || ||| Sbjct 4516 ACATCTCGGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAG 4470 Score = 105 bits (116), Expect = 1e-16 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 796151 CCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGT 796210 ||||||| || || |||||||||||||| || || |||||||||| ||||||||||| Sbjct 3982 CCTCGGGGACCTGCACCTCCTTCATGAACCGCACGCCCAGGTTCTCCAGCACGATGCCGT 3923 Query 796211 CGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCG 796270 | || || || ||||| || |||||| ||| ||||| |||| ||||| | |||| Sbjct 3922 CAGACGCCGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGCTTCTCGCCGTCGTTCAGCG 3863 Query 796271 AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGC 796313 |||||| | |||| ||| ||||| |||||||| || Sbjct 3862 TCTCCCAGTCCTGCACGTCGCTGCCCAGGTCAACCTCCTCAGC 3820 >seq2126 Length=41412 Score = 122 bits (134), Expect = 1e-21 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2073557 CCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTGCCCG 2073616 |||||||||| ||||| || |||||||| || | ||||||||| |||||||||||| Sbjct 17170 CCGTGTCGTTGAAGACCCGCAGCATGGGGACGATGCCGTTGGAGGTGCCGTTGGTGCCGC 17111 Query 2073617 CCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGCCT 2073676 | ||||| ||| | || ||| | |||||| || | ||||||||||| || | || Sbjct 17110 GGATGTAGGAGCCGGTGGAGCGGATGTTGTGCATGGACAGCCCGATGCCGCCCGCGGACT 17051 Query 2073677 TGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||||| ||||||| |||||||| || |||||||| Sbjct 17050 TGGAGATGCAGGCGCACTCCTTCAGCGTGTCATAGATGCC 17011 Score = 118 bits (130), Expect = 2e-20 Identities = 134/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 2069612 CGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACG 2069671 |||| || || || |||||||| |||||| |||||||||| ||| | ||| | Sbjct 20987 CGGTGAACTCCCCAGAGAGCACCCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGC 20928 Query 2069672 CCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCG 2069731 |||| |||||||||||||||| || | ||| ||||||||| | ||||| ||||||| Sbjct 20927 ACTCGTTGTTGCCCAGGATCTGGCTGGTGGAGGCGGTGGGCATGGGGGCCACCAGCAGCG 20868 Query 2069732 AGTTGCGCAGGCCGTACTGTCGC-ACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGG 2069787 ||||||||| ||||| ||| ||| | | | ||||| || | ||||||||||||| Sbjct 20867 AGTTGCGCACGCCGTGCTG-CGCTATGGACTCACGCAGCGCCTGCCAGTCCCAGCGG 20812 >seq2323 Length=73350 Score = 118 bits (130), Expect = 2e-20 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || || |||||| ||||||| |||||| ||| Sbjct 32438 TGAACTTGGTCACGGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCGCCGGGCA 32497 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||||||||| | | ||| |||||| || Sbjct 32498 GCACCAGGCGCACGGCGGTCTGGATCTCGCGGGAGGTCAGGGTGGGCTTCTTGTTCACGC 32557 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGAT 1485617 | ||||| | |||||| |||| |||| Sbjct 32558 GGGCCAGCGTGGCGGCCTGGGTGGCGAT 32585 Score = 114 bits (126), Expect = 2e-19 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||| || || |||||| ||||||| |||||| ||| Sbjct 66995 TGAACTTGGTCACAGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCGCCGGGCA 67054 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||||||||| | | ||| |||||| || Sbjct 67055 GCACCAGGCGCACGGCGGTCTGGATCTCGCGGGAGGTCAGGGTGGGCTTCTTGTTCACGC 67114 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGAT 1485617 | ||||| | |||||| |||| |||| Sbjct 67115 GGGCCAGCGTGGCGGCCTGGGTGGCGAT 67142 Score = 100 bits (110), Expect = 5e-15 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || || |||||| ||||||| |||||| ||| Sbjct 17877 TGAACTTGGTCACGGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCGCCGGGCA 17936 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | || ||||||||| |||||||| ||||||| Sbjct 17937 GCACCAAGCGCACGGCCGTCTGGATTTCGCGGG 17969 >seq2309 Length=18039 Score = 118 bits (130), Expect = 2e-20 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| |||||||| || |||||| ||||||| |||||| ||| Sbjct 10610 TGAACTTGGTCACGGCCTTGGTGCCCTCTGACACTGCGTGCTTGGCCAGCTCGCCGGGCA 10551 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| |||||||| ||||||| | | ||| |||||| || Sbjct 10550 GCACCAGGCGCACGGCAGTCTGGATTTCGCGGGAGGTCAGGGTGGGCTTCTTGTTCACGC 10491 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGAT 1485617 | ||||| || |||||| |||| |||| Sbjct 10490 GGGCCAGCTGGGCGGCCTGGGTGGCGAT 10463 >seq2318 Length=13727 Score = 113 bits (124), Expect = 7e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| ||||||||||| ||||| || || |||||| ||||||| |||||| ||| | Sbjct 2169 ACTTGGTCACGGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCGCCGGGCAGCA 2228 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 |||||||||||| ||||| |||||||||| | | ||| |||||| ||| | Sbjct 2229 CCAGGCGCACGGCAGTCTGAATCTCGCGGGAGGTCAGGGTGGGCTTCTTGTTCACGCGGG 2288 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGAT 1485617 |||| || |||||| |||| |||| Sbjct 2289 CCAGCTGGGCGGCCTGGGTGGCGAT 2313 >seq2812 Length=2232 Score = 111 bits (122), Expect = 2e-18 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 652886 ACGCACGTCGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTT 652945 ||||| ||||||||||||| | || ||||||| ||||| |||||| | ||||| Sbjct 1914 ACGCATTGCGAGGTGCACCCGGCCATGATCCTGGGCGTGTGCGCCTCCATCGTGCCCTTC 1973 Query 652946 TCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 652999 || ||||||||||| |||||||||||| ||||||| | ||||||||||||||| Sbjct 1974 CCCGACCACAACCAGTCGCCGCGCAACACCTACCAGTCCGCCATGGGCAAGCAG 2027 >seq1608 Length=15520 Score = 111 bits (122), Expect = 2e-18 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1485462 GGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC 1485521 |||| | || ||||||| || |||||||| ||||| || || |||||| ||||||| || Sbjct 10378 GGCAGAGGTGAACTTGGTCACAGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTC 10319 Query 1485522 GCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT 1485581 |||| ||| | ||||||||| ||||||||||||||||||| | | ||| ||| Sbjct 10318 GCCGGGCAGCACCAGGCGCACAGCGGTCTGGATCTCGCGGGAGGTCAGGGTGGGCTTCTT 10259 Query 1485582 GTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGAT 1485617 ||| ||| ||||| | |||||| |||| |||| Sbjct 10258 GTTGACGCGGGCCAGCGTGGCGGCCTGGGTGGCGAT 10223 >seq795 Length=15292 Score = 111 bits (122), Expect = 2e-18 Identities = 110/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 |||||||||||||| |||||||| || | ||||| | ||| ||| ||||||||| Sbjct 7504 GCCGCCAACTACCTGAACATCAAGTCCTTGCTCGACCTCACATGCCTGACGGTGGCCAAC 7563 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG-CACC 2035765 | |||||||||||| |||||||||| |||||||||||||| ||||| |||| | | || Sbjct 7564 ATGATCAAGGGCAAGACGCCCGAGGAGATCCGCAAGACCTTCAACATTGAGTAAGTCGCC 7623 Query 2035766 CTTGCCAGCCTTTTTATTTT 2035785 | | ||| || | |||||| Sbjct 7624 CCCGGCAG-CTATGTATTTT 7642 >seq413 Length=46773 Score = 111 bits (122), Expect = 2e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691 ||||||||||||||||||| | |||||| |||||||||| |||||||| || ||||| Sbjct 45218 CACCTTCCGGCTCAACCTGTCGGTGACGTCGCCCTACAACGCGGACTTTGATGGGGACGA 45277 Query 429692 GATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGG 429751 ||||||| |||| |||||||||||| | | | ||||| || ||| | | ||||| Sbjct 45278 GATGAACATGCATGTGCCCCAGTCGCACGAGACGCGCGCTGAGGTCAAGGAGATCATGGC 45337 Query 429752 CGTGGCCCTCAAGGCCGTGTCGCCGCAGG 429780 ||| | | || |||||| ||||||| Sbjct 45338 AGTGCCGCAGAACATCGTGTCACCGCAGG 45366 >seq2324 Length=8624 Score = 109 bits (120), Expect = 9e-18 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || || |||||| ||||||| |||||| ||| Sbjct 2422 TGAACTTGGTCACGGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCGCCGGGCA 2481 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | |||||||||||| |||||||||||||||| Sbjct 2482 GCACCAGGCGCACGGCTGTCTGGATCTCGCGGG 2514 >seq1613 Length=24984 Score = 109 bits (120), Expect = 9e-18 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || || |||||| ||||||| |||||| ||| Sbjct 13759 TGAACTTGGTCACGGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCGCCGGGCA 13700 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | ||||||||| ||||||||||||||||||| Sbjct 13699 GCACCAGGCGCACAGCGGTCTGGATCTCGCGGG 13667 >seq1610 Length=71910 Score = 109 bits (120), Expect = 9e-18 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || || |||||| ||||||| |||||| ||| Sbjct 9019 TGAACTTGGTCACGGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCGCCGGGCA 8960 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | ||||||||| ||||||||||||||||||| Sbjct 8959 GCACCAGGCGCACAGCGGTCTGGATCTCGCGGG 8927 Score = 109 bits (120), Expect = 9e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||| || || |||||| ||||||| |||||| ||| Sbjct 56253 TGAACTTGGTCACAGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCGCCGGGCA 56312 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| ||||||||||||||||||| | | ||| |||||| || Sbjct 56313 GCACCAGGCGCACAGCGGTCTGGATCTCGCGGGAGGTCAGGGTGGGCTTCTTGTTGACGC 56372 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGAT 1485617 | ||||| | |||||| |||| |||| Sbjct 56373 GGGCCAGCGTGGCGGCCTGGGTGGCGAT 56400 Score = 100 bits (110), Expect = 5e-15 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||| || || |||||| ||||||| |||||| ||| Sbjct 32056 TGAACTTGGTCACAGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCGCCGGGCA 32115 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | |||||||||||| ||||||||||| |||| Sbjct 32116 GCACCAGGCGCACGGCAGTCTGGATCTCACGGG 32148 >seq1634 Length=5122 Score = 100 bits (110), Expect = 5e-15 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||| || || |||||| ||||||| |||||| | | Sbjct 301 TGAACTTGGTCACAGCCTTGGTGCCCTCAGACACTGCGTGCTTGGCCAGCTCGCCGGGGA 242 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| |||||||| || |||||||||||||||| Sbjct 241 GGATGAGGCGCACCGCTGTCTGGATCTCGCGGG 209 >seq3113 Length=7586 Score = 98.7 bits (108), Expect = 2e-14 Identities = 106/138 (77%), Gaps = 8/138 (6%) Strand=Plus/Plus Query 122738 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCT-GAGCGTGTGCTGCGCGCC 122796 ||||||||||| |||||||| |||||| ||||||||||||| | ||| ||| |||| ||| Sbjct 155 GCCGAGAACCTGATGATCGTGGACCTGCTGCGCAACGACCTGGGGCGGGTG-TGCGAGCC 213 Query 122797 CGGCAGCGTCGTCGTACCGCCAGGTCGCCTCATGGCGATCGAGACCTATGCCGCCGTGCA 122856 |||||||| || ||| | || ||| ||| |||| ||| ||| |||| || Sbjct 214 GGGCAGCGTGCATGTGCCG------GGGCTGATGCAGATTGAGAGCTACGCCACCGTCCA 267 Query 122857 CCAGATGGTGACCACCGT 122874 |||||||||| |||| || Sbjct 268 CCAGATGGTGTCCACTGT 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915858026477789