Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq947 95.1 1e-14 seq584 84.2 2e-11 >seq947 Length=48402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || ||||| ||||| || | || |||| || Sbjct 33721 ATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCTTCA 33780 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| || ||| Sbjct 33781 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 33840 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| |||||| || ||||||||||| | || |||| || |||||| Sbjct 33841 CAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGGCTGATTACAAC 33900 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||||||||| |||| ||||| || | ||||| || || Sbjct 33901 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCTTGCGCGGTGG 33947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || || ||| | ||| || |||||| | ||||||| ||||| || ||||||||| Sbjct 31082 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTTATTTTCGCGGGCAAGCAGCTGGAG 31141 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| || |||| ||||||||||| || |||||||| || ||||| ||||| || Sbjct 31142 GACGGGCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTG 31201 Query 107769 AGATTGCGAGGGGG 107782 | |||| || || Sbjct 31202 CGCCTGCGTGGTGG 31215 >seq584 Length=13061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 107657 AGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAA 107716 |||| | ||| || |||||| | || || | ||| || || ||||||||||||| | Sbjct 640 AGGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCG 581 Query 107717 AACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCG 107776 || |||| ||||||||||| || |||||||| ||| ||||| ||||| || | |||| Sbjct 580 CACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCG 521 Query 107777 AGGGGG 107782 || || Sbjct 520 CGGCGG 515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398859051353539