Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq947 136 4e-27 seq584 120 3e-22 seq583 98.7 1e-15 seq186 98.7 1e-15 seq2126 93.3 4e-14 seq1364 89.7 5e-13 seq1200 84.2 2e-11 >seq947 Length=48402 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| ||||| || ||||| ||| ||| ||| | |||||| ||||| Sbjct 31710 ATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTCCTCCAGCTG 31651 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || || ||||||||||| || |||||||| |||||||| |||||| Sbjct 31650 CTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 31591 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | ||||| | || |||||| || | |||| ||| |||||||| Sbjct 31590 AGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCGGT 31531 Query 133637 CAGAGTTTTTACGAAAATCTGCA 133659 ||| || || || || ||||||| Sbjct 31530 CAGGGTCTTCACAAAGATCTGCA 31508 Score = 134 bits (148), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || |||||||| ||| ||| ||| | ||||| |||| Sbjct 33924 ATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGACCA-TCCTCCAGCT 33866 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||||||||| |||| || ||||||||||| || || ||||| |||||||| ||||| Sbjct 33865 GCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCT 33806 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||||| | | |||||| || | |||| ||| ||||| | Sbjct 33805 TGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACCTCAAGCGTGATGGTCTTGCCAG 33746 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || |||||||||||| Sbjct 33745 TCAAGGTCTTCACAAAAATCTGCATG 33720 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| ||| ||| | | | || || |||| Sbjct 33466 ATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCTTCTAGCT 33408 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || ||||||||||| || |||||||| |||||||| |||| Sbjct 33407 GCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCT 33348 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| | || |||||| || | |||| ||| ||||||| Sbjct 33347 TGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCGG 33288 Query 133636 TCAGAGTTTTTACGAAAATCTGCA 133659 ||| || || || |||||||||| Sbjct 33287 TCAAGGTCTTCACAAAAATCTGCA 33264 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| ||| ||| | ||||| ||||||||||| Sbjct 32236 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCATCCTCCAGCTGCTTGCCG 32177 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 32176 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTC 32117 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | | |||||| || | |||| || ||||| ||||| || Sbjct 32116 ACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTGATCGTCTTGCCAGTCAGGGTC 32057 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||| ||| Sbjct 32056 TTCACAAAGATCTGTATG 32039 Score = 109 bits (120), Expect = 5e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| ||| ||| ||| | |||||| ||| Sbjct 31194 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTCCTCCAGC 31135 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||||||||||| |||| || ||||||||||| || |||||||| |||||||| Sbjct 31134 TGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 31082 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| ||||| || ||||| ||| ||| ||| | | | ||||| || Sbjct 32964 AAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCCAG 32906 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 |||||||||||| | ||||| ||||||||||| || ||||||||| Sbjct 32905 CTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCT 32860 >seq584 Length=13061 Score = 120 bits (132), Expect = 3e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| || |||||||| |||||| Sbjct 2 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 61 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||| | | ||||| ||||| | | |||||| || | || | | Sbjct 62 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAATG 121 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 || ||||||||||| || || || |||||||||| Sbjct 122 GTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 >seq583 Length=2907 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| ||| ||| | |||||| ||||||||||| Sbjct 2754 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTCCTCCAGCTGCTTGCCA 2813 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||||||||| || |||| ||||| || |||||| ||| Sbjct 2814 GCGAAGATCAGGCGCTGCTGGTCGGGGGGAGTGCCCTCCTTATCCTGGATCTTGGCCTTC 2873 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 | | ||||| ||||| | | |||||| || Sbjct 2874 ACATTCTCAATGGTGTCTGACGACTCCACCTC 2905 >seq186 Length=14886 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/199 (72%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || ||||| ||||| ||| ||| ||| | |||||| |||||||||||| Sbjct 7192 GTCGACTCCTTGTGTATGTTGTAGTCGGCCAGGGTGTGCCCGTCCTCCAGCTGCTTGCCC 7251 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | | || ||||||| |||| | ||||||||||||||||| ||||| ||| Sbjct 7252 GCAAATAGTAGGCGCTGCTCGTCGTGCGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTC 7311 Query 133584 A-GCTGCTCAACCGTGTC---GGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 | ||| |||||| |||| | || ||||||||| | |||| || | |||| | | Sbjct 7312 ACGCT-CTCAACGCTGTCAGAAGAGGACTCCACGTCAATAGTGATTGTCTCGCCGCTGAC 7370 Query 133640 AGTTTTTACGAAAATCTGC 133658 || || | || |||||| Sbjct 7371 GGTCTTGAAAAATATCTGC 7389 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATG 133532 ||||| || ||||| ||| ||| || | |||||| ||||||||||| ||| | || Sbjct 4465 TTCTGGATGTTGTAGTCGGCCAGGGTACGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 4524 Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 || ||||||||||| || |||||||| |||||||| Sbjct 4525 AGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4559 >seq2126 Length=41412 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 149478 CCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537 ||||||||| |||| |||||| | ||| |||||||| ||| || || ||| Sbjct 16656 CCCTCGATGGAGTCGGCTTTCATGCAGACCAGGAAGCACGAAGACAGCTGGGGC---CGC 16600 Query 149538 GTGCCGGCCGCG---AACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATC 149594 | | | ||||| |||| ||||||||||||||||| || | ||||||||| | Sbjct 16599 GGGGTGCCCGCGTTAAACAGCGTGGGGCTGGCGTGTGTGAACCAGCGCTGGCTCATGAGG 16540 Query 149595 TCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATC 149654 | ||| | ||||| | ||| ||||| || || ||||| | || |||||||| Sbjct 16539 TGGTAGGTCTCGATGGCAGAGTCAATGTCCTCCTTGTGAATGCCGACAGCCACGCGCATG 16480 Query 149655 AGCATATGCTGCGGTCGCTCCGCCAC 149680 ||||| |||||||| |||||| |||| Sbjct 16479 AGCATGTGCTGCGGCCGCTCCACCAC 16454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 148272 AACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCG 148331 ||||| || | |||||| || |||| || | |||| || | || ||||| ||||| Sbjct 20982 AACTCCCCAGAGAGCACCCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCG 20923 Query 148332 TTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTG 148391 |||||||||| ||||| ||| | || ||||||||| || ||||||||||||||| Sbjct 20922 TTGTTGCCCAGGATCTGGCTGGTGGAGGCGGTGGGCATGGGGGCCACCAGCAGCGAGTTG 20863 Query 148392 CGCA 148395 |||| Sbjct 20862 CGCA 20859 >seq1364 Length=60691 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/140 (74%), Gaps = 9/140 (6%) Strand=Plus/Minus Query 120568 TCCACCGCCTCCTTGAACATGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGC 120627 ||||||| |||||| | || | ||| ||| | | |||| |||||| || | || Sbjct 45350 TCCACCGACTCCTTCACGATCATGTGCACCGTGCGCTCCGGCAGCTTGTGGTCCAGCAGC 45291 Query 120628 GTTCGGTAGTACAGG---CACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGC 120684 || ||||||| || |||||||| |||||||||||||||||||| |||||| Sbjct 45290 GT------GTACAGGTAGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCGCGGCTGATCAGC 45237 Query 120685 TCGTTGCTAAACGTCAGGCC 120704 |||||||| ||||||||||| Sbjct 45236 TCGTTGCTGAACGTCAGGCC 45217 >seq1200 Length=20974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 || ||| |||||||| ||||| |||||||| || || || || ||||||||||| || || Sbjct 5291 CAAGCAGGCAAAGTCGGTGTGGAGGCCCTCATCACGGGAGATGAGCTCGTTGCTGAAGGT 5232 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGG 120739 |||||| ||||| | ||| | |||||| |||| |||| Sbjct 5231 CAGGCCCGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGG 5191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483398737883240