Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq3544 522 8e-144 >seq3544 Length=2542 Score = 522 bits (578), Expect = 8e-144 Identities = 689/950 (73%), Gaps = 4/950 (0%) Strand=Plus/Plus Query 28617 TAACCCTTGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGG 28676 || || ||||| | |||| | | ||| | ||| || | |||||| | || | || Sbjct 1595 TAGCCTTTGGGCTCGTTTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGG 1654 Query 28677 GTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTG 28735 |||||||| | |||||||| | | | |||| || | ||| || ||||||| Sbjct 1655 TTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACAGCAACTA-CTGTATTTATTATTG 1713 Query 28736 CATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTC 28795 || ||||| ||||| || || || |||||||| ||||| || || || | || | Sbjct 1714 GTTTTATTGCTGCACCTCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTT 1773 Query 28796 TTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGAC 28855 | | || || |||||||| || | || || | | || | ||||| || || Sbjct 1774 TATTATACGGTAACAACATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTA 1833 Query 28856 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 28915 | |||||||||||||||||||||||| |||| | || |||||| | || ||||| || | Sbjct 1834 TGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTC 1893 Query 28916 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 28975 | | |||| | | || | ||| || |||| || | | ||||| ||||| || |||| Sbjct 1894 CTTACCAATTAATCGTTTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGT 1953 Query 28976 GGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCG 29035 |||||||| | || |||| ||| | || ||||| ||| || || |||||||| | Sbjct 1954 GGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTG 2013 Query 29036 TCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACG 29095 | || || || ||| || ||| | | ||||| ||||||||||||||||| || | Sbjct 2014 TAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATG 2073 Query 29096 CGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATA 29155 |||||||| |||||||| || || ||||| | |||| | || |||||||| ||||||| Sbjct 2074 GTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATA 2133 Query 29156 ACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTAT 29215 |||| || |||||||| ||||||||||| || |||||||| || || ||||| || ||| Sbjct 2134 ACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTAT 2193 Query 29216 TTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACA 29275 || ||| ||||| ||||| | || || || || ||| | ||||| || |||||| || Sbjct 2194 TTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACG 2253 Query 29276 TCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCG 29335 ||| ||| ||||||||| || || ||||||||||| ||||| |||||||| || | Sbjct 2254 AATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAG 2313 Query 29336 CTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTC 29395 ||||||| ||||| || ||||| || ||||||||||||||||| || || ||||| Sbjct 2314 CTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCAT 2373 Query 29396 TACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTT 29455 |||||||||| | ||||| ||||| || ||| | ||||||||| |||| || || ||| Sbjct 2374 TACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTT 2433 Query 29456 CTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGA-CAACAAT 29514 | || ||||| ||||| | ||||| || ||||| ||||| || || | || |||| Sbjct 2434 CAACTATGGCATTTAACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAA- 2492 Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGG 29564 |||||||| ||||| ||||||||||| || | || || |||||||| || Sbjct 2493 GGTCGTGTAATTAACACTTGGGCTGACATTATTAACCGTGCTAACCTTGG 2542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146659241221246