Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1200 136 6e-26 seq2126 123 4e-22 seq3113 105 1e-16 seq2812 102 1e-15 seq2323 98.7 1e-14 seq1610 98.7 1e-14 seq1608 98.7 1e-14 seq413 96.9 5e-14 seq2324 91.5 2e-12 seq2318 91.5 2e-12 seq1613 91.5 2e-12 seq2309 89.7 7e-12 >seq1200 Length=20974 Score = 136 bits (150), Expect = 6e-26 Identities = 132/167 (79%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| |||||||| ||||| || ||||||||||| || | ||||| || ||| | Sbjct 4471 TTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCCGAGATGTACTCCCTGCTGCTG 4530 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || | ||| |||||||| | | ||||||| ||| |||||| | ||||| ||| |||||| Sbjct 4531 GAGTCGTACATCAAGGACTCTGCCGAGAAGAACCGCCTCTTCCACGCCACCGAGACGGTG 4590 Query 1456111 CC-GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACA 1456156 || ||| || | ||| ||||| ||||||||| | |||||||||| || Sbjct 4591 CCAGTC-GTCAAGAAGAAGGCGGACTGGGCGCTCAAGTGGATCACCA 4636 >seq2126 Length=41412 Score = 123 bits (136), Expect = 4e-22 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTT 262934 ||||||||||||| | || ||||| | ||| | ||||| ||| ||||||||||| | Sbjct 20812 CCGCTGGGACTGGCAGGCGCTGCGTGAGTCCATAGCGCAGCACGGCGTGCGCAACTCGCT 20871 Query 262935 GCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTT 262994 ||| ||||| | ||||||||| ||| | || |||||||||||||||| |||| || Sbjct 20872 GCTGGTGGCCCCCATGCCCACCGCCTCCACCAGCCAGATCCTGGGCAACAACGAGTGCTT 20931 Query 262995 CGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCG 263050 ||| | ||| |||||||||| |||||| |||||||| || || || |||| Sbjct 20932 TGAGCCCTACACCTCCAACATCTACGTGCGCCGGGTGCTCTCTGGGGAGTTCACCG 20987 Score = 122 bits (134), Expect = 1e-21 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 260006 GGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGT 260065 ||||||||||||||||| ||| ||||||| |||||||||| | || ||||||||||| Sbjct 17011 GGCATCTATGACACGCTGAAGGAGTGCGCCTGCATCTCCAAGTCCGCGGGCGGCATCGGG 17070 Query 260066 TTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCC 260125 | || ||||| | ||| || | ||| ||||| | |||||||||||| ||| Sbjct 17071 CTGTCCATGCACAACATCCGCTCCACCGGCTCCTACATCCGCGGCACCAACGGCACCTCC 17130 Query 260126 AACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGG 260165 |||||| | || |||||||| || || || |||||||||| Sbjct 17131 AACGGCATCGTCCCCATGCTGCGGGTCTTCAACGACACGG 17170 >seq3113 Length=7586 Score = 105 bits (116), Expect = 1e-16 Identities = 107/137 (78%), Gaps = 8/137 (6%) Strand=Plus/Minus Query 2129731 ACGGTGGTCACCATCTGGTGCACGGCGGCATAGGTCTCGATCGCCATCAGCCGGCCGCGC 2129790 || |||| |||||||||||| |||| ||| ||| |||| ||| |||||||| | Sbjct 285 ACAGTGGACACCATCTGGTGGACGGTGGCGTAGCTCTCAATCTGCATCAGCCC------C 232 Query 2129791 GGCACGACGACGCTGCCGGGCGCGCAGCACACGCTC-AGGTCGTTGCGCACCAGATCGAC 2129849 ||||| |||||||| ||| |||| ||| ||| | ||||||||||||| ||| || || Sbjct 231 GGCACATGCACGCTGCCCGGCTCGCA-CACCCGCCCCAGGTCGTTGCGCAGCAGGTCCAC 173 Query 2129850 GATCATGAGGTTCTCGG 2129866 |||||| |||||||||| Sbjct 172 GATCATCAGGTTCTCGG 156 >seq2812 Length=2232 Score = 102 bits (112), Expect = 1e-15 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 ||||||||||||||| | ||||||| |||||||||||| ||||||||||| || || || Sbjct 2027 CTGCTTGCCCATGGCGGACTGGTAGGTGTTGCGCGGCGACTGGTTGTGGTCGGGGAAGGG 1968 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGT 1601472 | |||||| ||||| ||||||| || | |||||| |||||| ||||| Sbjct 1967 CACGATGGAGGCGCACACGCCCAGGATCATGGCCGGGTGCACCTCGCAATGCGT 1914 >seq2323 Length=73350 Score = 98.7 bits (108), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 724966 AGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGG 725025 || ||||| | ||| | |||||||| || ||| | | || |||| |||| ||| Sbjct 32632 AGGCCATGGCTATCCTCAACTCGTTCATCGTGGACCAGTTTGAGAAGATCGCCACCCAGG 32573 Query 725026 CCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085 ||| ||||| ||| |||||| ||| | | | |||||||||||||||| Sbjct 32572 CCGCCACGCTGGCCCGCGTGAACAAGAAGCCCACCCTGACCTCCCGCGAGATCCAGACCG 32513 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||||| | ||| |||||| ||||||| |||||| || ||||||||||||| Sbjct 32512 CCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTGTCCGAGGGCACCA 32456 Score = 96.9 bits (106), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 ||||||||||||||||||||||||||| | ||| |||||| ||||||| |||||| || Sbjct 67085 CGCGAGATCCAGACCGCCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTG 67026 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 67025 TCCGAGGGCACCA 67013 >seq1610 Length=71910 Score = 98.7 bits (108), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 724966 AGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGG 725025 || ||||| | ||| | |||||||| || ||| | | || |||| |||| ||| Sbjct 56447 AGGCCATGGCCATCCTCAACTCGTTCATCGTGGACCAGTTTGAGAAGATCGCCACCCAGG 56388 Query 725026 CCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085 ||| ||||| ||| ||||||| ||| | | | |||||||||||||||| Sbjct 56387 CCGCCACGCTGGCCCGCGTCAACAAGAAGCCCACCCTGACCTCCCGCGAGATCCAGACCG 56328 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||||||| | ||| |||||| ||||||| |||||| || ||||||||||||| Sbjct 56327 CTGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTGTCCGAGGGCACCA 56271 Score = 91.5 bits (100), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 ||||||||||||||||| ||||||||| | ||| |||||| ||||||| |||||| || Sbjct 8929 CGCGAGATCCAGACCGCTGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTG 8988 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 8989 TCCGAGGGCACCA 9001 Score = 87.8 bits (96), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || ||||||||||| |||||||||||| | ||| |||||| ||||||| |||||| || Sbjct 32146 CGTGAGATCCAGACTGCCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTG 32087 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 32086 TCCGAGGGCACCA 32074 >seq1608 Length=15520 Score = 98.7 bits (108), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 724966 AGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGG 725025 || ||||| | ||| | |||||||| || ||| | | || |||| |||| ||| Sbjct 10176 AGGCCATGGCCATCCTCAACTCGTTCATCGTGGACCAGTTTGAGAAGATCGCCACCCAGG 10235 Query 725026 CCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085 ||| ||||| ||| ||||||| ||| | | | |||||||||||||||| Sbjct 10236 CCGCCACGCTGGCCCGCGTCAACAAGAAGCCCACCCTGACCTCCCGCGAGATCCAGACCG 10295 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||||||| | ||| |||||| ||||||| |||||| || ||||||||||||| Sbjct 10296 CTGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTGTCCGAGGGCACCA 10352 >seq413 Length=46773 Score = 96.9 bits (106), Expect = 5e-14 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 1817516 CCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGCGTCACCTCGGCGCGCGCGT 1817575 ||||||| |||||| | || | | ||| |||| | | | | ||||| ||||||| | Sbjct 45366 CCTGCGGTGACACGATGTTCTGCGGCACTGCCATGATCTCCTTGACCTCAGCGCGCGTCT 45307 Query 1817576 C-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGC 1817634 | | |||||||||||||| | |||||||||||| || |||||||| || ||||||| Sbjct 45306 CGTGCGACTGGGGCACATGCATGTTCATCTCGTCCCCATCAAAGTCCGCGTTGTAGGGCG 45247 Query 1817635 CCGTGACGGCCAGGTTGAACCGCATGGT 1817662 ||| || | |||||||| ||| | ||| Sbjct 45246 ACGTCACCGACAGGTTGAGCCGGAAGGT 45219 >seq2324 Length=8624 Score = 91.5 bits (100), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 |||||||||||||| |||||||||||| | ||| |||||| ||||||| |||||| || Sbjct 2512 CGCGAGATCCAGACAGCCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTG 2453 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 2452 TCCGAGGGCACCA 2440 >seq2318 Length=13727 Score = 91.5 bits (100), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 725013 ATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC 725072 |||| |||| |||||| | ||||| ||| |||||| ||| | | | ||| Sbjct 2313 ATCGCCACCCAGGCCGCCCAGCTGGCCCGCGTGAACAAGAAGCCCACCCTGACCTCCCGC 2254 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||||| ||||| |||||||||||| | ||| |||||| ||||||| |||||| || ||| Sbjct 2253 GAGATTCAGACTGCCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTGTCC 2194 Query 725133 GAGGGCACCA 725142 |||||||||| Sbjct 2193 GAGGGCACCA 2184 >seq1613 Length=24984 Score = 91.5 bits (100), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 ||||||||||||||||| ||||||||| | ||| |||||| ||||||| |||||| || Sbjct 13669 CGCGAGATCCAGACCGCTGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTG 13728 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 13729 TCCGAGGGCACCA 13741 >seq2309 Length=18039 Score = 89.7 bits (98), Expect = 7e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 724966 AGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGG 725025 || ||||| | ||| | |||||||| | ||| | |||| |||| |||| ||| Sbjct 10416 AGGCCATGGCCATCCTCAACTCGTTCATTGCTGACCAGTTCGAGAAGATCGCCACCCAGG 10475 Query 725026 CCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085 ||| | ||||| ||| |||||| ||| | | | ||||| |||||||| | Sbjct 10476 CCGCCCAGCTGGCCCGCGTGAACAAGAAGCCCACCCTGACCTCCCGCGAAATCCAGACTG 10535 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||||| | ||| |||||| ||||||| |||||| || || |||||||||| Sbjct 10536 CCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTGTCAGAGGGCACCA 10592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177459054339462