Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq947 161 9e-35 seq583 109 5e-19 seq584 104 2e-17 seq824 102 7e-17 seq186 91.5 1e-13 >seq947 Length=48402 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | || ||||| ||| | ||| |||||| || ||||||||||| ||| Sbjct 33947 CCACCGCGCAAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCC 33888 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| |||||||| |||| ||||||||||| | ||| Sbjct 33887 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGA 33828 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | ||||| || |||||| Sbjct 33827 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACC 33768 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| || || || ||||| || |||||||| |||||||| Sbjct 33767 TCAAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | |||| |||||| || |||||||| |||||| Sbjct 32266 CCACCGCGCAGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 32207 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| | || ||||||||||| || ||||| |||| ||||||||||| | || Sbjct 32206 AGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 32147 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | ||||| ||| |||||| Sbjct 32146 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACC 32087 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||| || || |||| || |||||||| ||||| || Sbjct 32086 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTAT 32040 Score = 156 bits (172), Expect = 4e-33 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| ||| | ||| |||||| || |||||||| |||||| Sbjct 31733 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 31674 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| |||| ||||||||||| || ||||| |||| ||||||||||| | || Sbjct 31673 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 31614 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | ||||| || |||||| Sbjct 31613 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACC 31554 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 |||| |||||| || || || |||| || |||||||| ||||||| Sbjct 31553 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 141 bits (156), Expect = 8e-29 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| ||| | ||| |||||| || |||||||| |||||| Sbjct 33489 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 33430 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| |||| ||||||||||| | || Sbjct 33429 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 33370 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| ||||| ||||| | | | | ||||| || |||||| Sbjct 33369 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACC 33310 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 |||| |||||| || || || ||||| || |||||||| ||||||| Sbjct 33309 TCCAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || | || |||||| || |||||||| |||||| Sbjct 31215 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 31156 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| |||| ||||||||||| ||||| || || | ||||||||||| | || Sbjct 31155 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGGG 31096 Query 35630 ACGCTCTCCTTGTCC 35644 | || |||||||||| Sbjct 31095 ATGCCCTCCTTGTCC 31081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||||||| | || |||||| || |||||||| |||||| Sbjct 32985 CCACCGCGCAGGCGCAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCC 32926 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 | ||| || | || ||||||||||| |||||||| || | ||||||||||| Sbjct 32925 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTC 32873 >seq583 Length=2907 Score = 109 bits (120), Expect = 5e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| || | ||| |||||| || |||||||| ||||||| ||| ||| |||| Sbjct 2738 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTC 2797 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || || || |||| ||||||||||| | ||| || |||||| || Sbjct 2798 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGAGTGCCCTCCTTATC 2857 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCA 35693 | |||||| ||||| | | | | ||||| ||| |||||||||| Sbjct 2858 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCA 2907 >seq584 Length=13061 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || || || |||| ||||||||||| | || | || ||||||| Sbjct 2 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 61 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||||| ||||| | | | | ||||| ||| |||||||||| ||| || Sbjct 62 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAATG 121 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || |||| || || ||||| ||||||| || Sbjct 122 GTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCAATC 158 >seq824 Length=95357 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 44166 GGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAA 44225 || || |||||| | |||||| ||||| ||| ||||||||| |||||||| ||| Sbjct 17756 GGCAAGATGCACGGCTTCATGCGCATGTACTGGGCCAAGAAGATCCTGGAGTGGACGGCG 17815 Query 44226 GATGCGCAAACCGCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGACGGT 44285 || | ||||| | ||||||| || |||||||||||| ||||||| Sbjct 17816 TCGCCGGAGGAGGCGCTGGAGGTGTCCATCTACCTCAACGACAAGTACGAGCTGGACGGG 17875 Query 44286 CGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGAC 44339 |||||||||||||| ||||| || || ||||||||| | ||||| |||| ||| Sbjct 17876 CGCGACCCCAACGGCTACGTGGGCTGCATGTGGTCCGTCTGCGGCATCCATGAC 17929 >seq186 Length=14886 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| ||||||| ||| ||| |||| ||||||||||| || || || | Sbjct 4463 CCTTCTGGATGTTGTAGTCGGCCAGGGTACGCCCGTCCTCCAGCTGCTTGCCGGCGAAGA 4522 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 ||| ||||||||||| | || | || |||||||||| Sbjct 4523 TCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 4560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| ||||||||||| |||||||| Sbjct 7197 CTCCTTGTGTATGTTGTAGTCGGCCAGGGTGTGCCCGTCCTCCAGCTGCTTGCCCGCAAA 7256 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660 || | ||||||| ||| || | || ||||||||| ||||| ||||| Sbjct 7257 TAGTAGGCGCTGCTCGTCGTGCGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTCA 7312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450773026907080