Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq947 122 9e-23 seq583 100 3e-16 seq584 95.1 1e-14 seq186 89.7 5e-13 seq2126 82.4 8e-11 >seq947 Length=48402 Score = 122 bits (134), Expect = 9e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| || || || || || ||||| || |||||||||||| | | |||| | Sbjct 33480 AGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 33421 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 33420 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 33361 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | ||||| || || ||||| || || || Sbjct 33360 TTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCCAGCGTG 33301 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712 ||||| || ||||| || || || || ||||| |||| Sbjct 33300 ATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 113 bits (124), Expect = 5e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| || || || || || ||||| || |||||||||||| | | |||| | Sbjct 31724 AGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 31665 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 31664 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 31605 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| || || ||||| || || || Sbjct 31604 TTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGCGTG 31545 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712 ||||| || ||||| | || || || || || |||| Sbjct 31544 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || |||||||||||| | | |||| | Sbjct 32257 AGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 32198 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| |||||||| || || || ||||| || Sbjct 32197 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 32138 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| ||||| ||||| || || || Sbjct 32137 TTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTG 32078 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || || || || || || Sbjct 32077 ATCGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTAT 32040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||||| ||||| || |||||||||||| | | |||| | Sbjct 31206 AGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 31147 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||| | |||||||| || || || ||||| || Sbjct 31146 CCGTCCTCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 31087 Query 134616 TTTTCTTG 134623 || || || Sbjct 31086 TTGTCCTG 31079 >seq583 Length=2907 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || |||||||||||| | | |||| | Sbjct 2733 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 2792 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| ||||| || |||| || Sbjct 2793 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGAGTGCCCTCC 2852 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTC 134668 || || || || || || || || | ||||| ||||| ||||| || Sbjct 2853 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTC 2905 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| ||||| || |||||||||||| | | |||| | Sbjct 2063 AGGCGCAGCACTAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 2122 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| ||||| |||| |||||||| || || || |||||| Sbjct 2123 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 2179 >seq584 Length=13061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || ||||||||||| | | |||| | Sbjct 524 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 583 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| ||||| |||| |||||||| || || || |||||| Sbjct 584 CCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 640 >seq186 Length=14886 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGC 134567 |||| ||||| || ||||| || |||||||||||| | | |||||| ||| || ||| Sbjct 7183 AGGTAAAGCGTCGACTCCTTGTGTATGTTGTAGTCGGCCAGGGTGTGCCCGTCCTCCAGC 7242 Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || ||||| ||||| | | ||||||| ||| |||| |||||||| || || ||||| Sbjct 7243 TGCTTGCCCGCAAATAGTAGGCGCTGCTCGTCGTGCGGGATGCCTTCCTTGTCCTGAATC 7302 Query 134628 TT 134629 || Sbjct 7303 TT 7304 >seq2126 Length=41412 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 8840 TGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAA 8899 ||||||| |||||| ||||||| ||||||||||||| | || || || |||| | Sbjct 20859 TGCGCAACTCGCTGCTGGTGGCCCCCATGCCCACCGCCTCCACCAGCCAGATCCTGGGCA 20918 Query 8900 ACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTG 8949 ||||||| | ||||||||| | |||| |||| | |||||| | || ||| Sbjct 20919 ACAACGAGTGCTTTGAGCCCTACACCTCCAACATCTACGTGCGCCGGGTG 20968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505375334880520