Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq3544 681 0.0 seq3157 419 3e-112 seq3158 96.9 4e-15 >seq3544 Length=2542 Score = 681 bits (754), Expect = 0.0 Identities = 713/934 (76%), Gaps = 2/934 (0%) Strand=Plus/Plus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 ||| || |||||| | ||| || | ||||| | || |||||||||| || || | Sbjct 1610 TTTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTT 1669 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 |||||||| ||| | || ||||||| | |||| || || | | || | ||||| | Sbjct 1670 AATGATTCCTACTTTATTAACAGCAACTA-CTGTATTTATTATTGGTTTTATTGCTGCAC 1728 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | ||||| || || || || |||||||| || || | ||||| | | || ||||||| Sbjct 1729 CTCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACA 1788 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 |||| || ||||||| || |||| |||| || || |||||| | |||||||| || | Sbjct 1789 ACATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAA 1848 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | |||||||| || ||| | || || ||| | |||||||||||||||| |||| | | | Sbjct 1849 TTTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCG 1908 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACC 160317 | | || || | ||||| || | || |||||||| ||||||||||||||||| | || Sbjct 1909 TTTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCC 1968 Query 160318 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 160377 ||||||||||||| || |||||| |||||| ||||| ||||| || ||||| || || Sbjct 1969 GTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTG 2028 Query 160378 CTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160437 |||||||| | | || ||| |||||||||||||||| || |||| ||||||| | |||| Sbjct 2029 CTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTA 2088 Query 160438 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160497 | ||||||||||| || | |||| ||||||||||||||||||| || ||||||||||| | Sbjct 2089 TTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACC 2148 Query 160498 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 160557 | ||||||||||| || |||||||| ||||| ||||| || || || ||||||||||| | Sbjct 2149 CATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATG 2208 Query 160558 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 160617 | | || ||||| || || |||||||||| ||||||| || || ||| | Sbjct 2209 GTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTG 2268 Query 160618 GTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCG 160677 |||| || ||||||||||| ||||| || ||||||||||| ||||| || || ||||||| Sbjct 2269 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCG 2328 Query 160678 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 160737 ||||||| || ||||||||||| || || |||||||| |||||| | |||||||| | | Sbjct 2329 GTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAG 2388 Query 160738 CAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 160797 | || |||||||| || | || |||||||||||| | ||| || || |||||||| | Sbjct 2389 CTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 2448 Query 160798 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACA 160857 || | ||||| |||||||||||||| || | | ||| |||||||||||| | |||| Sbjct 2449 ACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACA 2508 Query 160858 CCTGGGCAGACGTACTGAATCGTGCTGGTCTTGG 160891 | ||||| ||| | | || |||||| ||||| Sbjct 2509 CTTGGGCTGACATTATTAACCGTGCTAACCTTGG 2542 >seq3157 Length=2513 Score = 419 bits (464), Expect = 3e-112 Identities = 611/861 (71%), Gaps = 2/861 (0%) Strand=Plus/Plus Query 161682 GGGTGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 161741 || ||||||||||| | ||||| ||||| || || || || || || || || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 161742 TCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACA 161801 ||||| | | ||| | || |||||||||||||| |||| | ||| |||| || || Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 161802 ACTTTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAAC 161861 || || | ||| |||||||| ||||| | ||||| || ||| | || ||| || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 161862 TTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CT 161920 ||| | || ||| ||||| || |||||| | ||||||||||||| || || || || Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCT-TTATTATTCCT 1872 Query 161921 CTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAA 161980 ||||||||||| || ||||| ||||| || ||| ||| | || || || ||| Sbjct 1873 TTGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGC 1932 Query 161981 TTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACT 162040 |||| ||||| |||||| | || | || ||||| || ||||| ||||| |||||| | Sbjct 1933 TTTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAAT 1992 Query 162041 GGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGT 162100 |||||| | || ||||| || || || |||||||| || | || |||||| | Sbjct 1993 TGCACGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCT 2052 Query 162101 TTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTC 162160 |||||| || ||| | || |||||||| ||||| || |||||||||| || || Sbjct 2053 TTTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAG 2112 Query 162161 CTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGAC 162220 ||||| || ||||| || || | ||| | || ||| | ||||| || ||||||||||| Sbjct 2113 TTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGAC 2172 Query 162221 CCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGC 162280 | || || || ||||||||||| ||||||||| | ||||||| |||||||| ||||| Sbjct 2173 ATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGC 2232 Query 162281 TATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTT 162340 ||||| || | ||||| |||||||| | | || |||||||| || || || || Sbjct 2233 AATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTT 2292 Query 162341 TAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 162400 || ||| | | ||||| | ||||| || |||||| | || || ||||| || || Sbjct 2293 CCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTT 2352 Query 162401 CTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 162460 ||||| || || || ||| | || |||||||| || || ||| | || || || ||||| Sbjct 2353 TTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTT 2412 Query 162461 GTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAA 162520 ||| || || || | ||||| |||| ||||||| | ||||| | || | || Sbjct 2413 GTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAA 2472 Query 162521 CCTTCGTGCTTACGATTTCGT 162541 | ||||| || |||||||| Sbjct 2473 TTTACGTGCATATGATTTCGT 2493 >seq3158 Length=11629 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 162563 AGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACG 162622 |||||||||||| |||||||| ||||| ||||| || ||||| | ||||| || | || Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 162623 TGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCT 162682 ||| ||| | || || |||||||| ||||| || || | ||||| || || ||| | Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 120 Query 162683 TCCTAGAGGCAACGCCCTTTAAT 162705 || | || ||||| ||||||| Sbjct 121 ACCACGTGGAAACGCTCTTTAAT 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559478465636200