Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3544 702 0.0 seq3157 408 6e-109 >seq3544 Length=2542 Score = 702 bits (778), Expect = 0.0 Identities = 701/906 (77%), Gaps = 2/906 (0%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||| | ||| |||||||||| |||||| ||||||||||||| || ||| | |||||| Sbjct 1638 AACCGTTTATACATCGGTTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACAGCAACT 1697 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 ||| || ||||| | ||| | | ||| || || || || || || || |||||||| Sbjct 1698 -ACTGTATTTATTATTGGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTATCCGTGA 1756 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 |||||| | ||||| | | || || |||||||| || ||||||| || |||||| Sbjct 1757 GCCAGTATCAGGTTCTTTATTATACGGTAACAACATTATTACTGGTGCTATTATTCCTAC 1816 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 |||||| || || ||| | |||||||||||||| |||||||| || || | |||||||| Sbjct 1817 TTCAAATGCTATTGGTATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGACGAATG 1876 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | || ||||||||||||| |||| || | || | ||| || | || ||||| | ||| Sbjct 1877 GTTATATAACGGTGGTCCTTACCAATTAATCGTTTGCCATTTTATCATCGGTATTTGCGC 1936 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 |||||||| |||||||||||||| |||| |||||||||||| | ||||||||| ||| Sbjct 1937 TTATATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGT 1996 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||| || || || || || || || ||| || |||||| | | || ||| ||||||| Sbjct 1997 AGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCA 2056 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 |||||| || || || | ||||| || ||||| ||||| || ||||| | |||| | || Sbjct 2057 AGGTTCTTTTTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCATGATTGT 2116 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||||||||||||||||||||| | |||||||| ||||||||| | || || || ||||| Sbjct 2117 ATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGT 2176 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCG 175093 || ||||||||||| || || || |||||||||||| | || || ||||| ||| | || Sbjct 2177 ATTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCTTATTCG 2236 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 ||| || ||||||| || || ||| ||||||||| ||||| ||||||||||| || Sbjct 2237 TGAAACTACTGAAAACGAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAAC 2296 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 || |||||||| ||||| || ||||||||||||||||| || |||||||| ||||| || Sbjct 2297 TTACAACATCGTTGCAGCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTT 2356 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 |||||||| || ||| | |||||||| ||||| || ||||| ||||| |||| ||||| Sbjct 2357 TAACAACTCTCGTTCATTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTT 2416 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 ||| || | ||| |||| || |||||||| ||| | || || |||||||||||||| || Sbjct 2417 CACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAACCAATC 2476 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 ||| | || ||||||| | ||| | ||||| ||||| || || ||||| | ||| Sbjct 2477 AGTTGTAGATTCACAAGGTCGTGTAATTAACACTTGGGCTGACATTATTAACCGTGCTAA 2536 Query 175394 TCTTGG 175399 ||||| Sbjct 2537 CCTTGG 2542 >seq3157 Length=2513 Score = 408 bits (452), Expect = 6e-109 Identities = 621/877 (71%), Gaps = 8/877 (1%) Strand=Plus/Plus Query 175845 GGGTGGTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGG 175904 || |||| ||| ||| | || || ||||| | | || | ||| | || | || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 175905 TCTGGATTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACA 175964 ||||| ||| ||||| | || |||||||||||||| |||| | ||| |||| || || Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 175965 ACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAAC 176024 || ||||| || |||||| || ||||| | ||| || ||| | || ||| || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 176025 TTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 176084 ||| | || ||||| || || || || ||| || ||||||||||||| | | | ||| Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 176085 TGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCC 176144 |||||||||||| | || || || || || ||| ||| | || || |||||| | Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 176145 TTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTG 176204 ||| || || || ||| | || | ||| ||||| || ||||||||||| |||||| | Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 176205 GCAAGACTCATTGGTA-TCCGTCCCTACAACGCTATTGCATT--CAGTGGTCCTATCGCT 176261 ||| | ||| | | | ||||| || ||||| ||||| || ||| | || || ||| Sbjct 1994 GCACGT-TCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCG--CCAATTGCT 2050 Query 176262 GTATTTGTCAGTGTGTTTCTTC-TATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCC 176320 | ||||| ||| |||||| | |||||| ||||||||||| ||||| ||||| || Sbjct 2051 CTTTTTGTTTCTGT-TTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACC 2109 Query 176321 CTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTG 176380 |||||||| ||||| || || | ||| | || ||| | || ||||| || ||||| Sbjct 2110 TAGTTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTG 2169 Query 176381 GACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATC 176440 |||| | || || || ||||||||||| ||||||||| | ||||||| ||||| || || Sbjct 2170 GACATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTC 2229 Query 176441 TGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACAC 176500 |||||| ||||| | || || |||||||| || | |||||||||||| || || Sbjct 2230 TGCAATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATAC 2289 Query 176501 CTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCG 176560 ||| ||| || | | || || | ||||| |||||||| | || || || || || Sbjct 2290 TTTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCG 2349 Query 176561 CTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTAT 176620 || ||||| ||||| || || || || ||| |||||| |||||| | ||||||||||| Sbjct 2350 TTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTAT 2409 Query 176621 GTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCT 176680 |||||| || || || | ||||||||| | |||||| | |||| | || | Sbjct 2410 GTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATT 2469 Query 176681 TAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATT 176717 ||| | ||||| |||||||| || ||||| ||| Sbjct 2470 AAATTTACGTGCATATGATTTCGTATCACAAGAAATT 2506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729896287837880