Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq947 127 6e-24 seq584 100 9e-16 >seq947 Length=48402 Score = 127 bits (140), Expect = 6e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || || ||||| || |||||||| || || || || || || Sbjct 33493 CATGCCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 33434 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || |||||||| || || || || |||||||| || || ||||| ||||| Sbjct 33433 GGCCAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGG 33374 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || || || ||||| ||||| | || || | || Sbjct 33373 CGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTC 33314 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || || | ||||| ||||| | || || ||||||||||||| Sbjct 33313 CACCTCCAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| || || | || || ||||| || |||||||| || || || || ||||||| Sbjct 33947 CCACCGCGCAAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCC 33888 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || || || || || ||||| || || || ||||| ||||| ||| Sbjct 33887 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGA 33828 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || ||||| || || | || || | || || Sbjct 33827 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACC 33768 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || | || || |||||||||||||| Sbjct 33767 TCAAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 >seq584 Length=13061 Score = 100 bits (110), Expect = 9e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 140582 ATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTT 140641 ||| || || || || ||||| ||||| || || ||||| ||||| || || || || || Sbjct 1 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 60 Query 140642 ATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAAC 140701 ||||| || || || || ||||| ||||| | || || | || || || || |||| Sbjct 61 GTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAAT 120 Query 140702 TGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 ||||| ||||| || || || ||||||||||||| Sbjct 121 GGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515183518766753