Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2126 109 6e-19 seq1200 89.7 6e-13 >seq2126 Length=41412 Score = 109 bits (120), Expect = 6e-19 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 ||||| | ||||||||| |||| || || |||||||| |||||||| ||| ||||||| Sbjct 20852 CACGGCGTGCGCAACTCGCTGCTGGTGGCCCCCATGCCCACCGCCTCCACCAGCCAGATC 20911 Query 20426 ATGGGGAACAACGAG-GCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCG 20478 |||| ||||||||| ||||| ||||| ||||| ||||||||||| |||| || Sbjct 20912 CTGGGCAACAACGAGTGCTTT-GAGCCCTACACCTCCAACATCTACGTGCGCCG 20964 Score = 104 bits (114), Expect = 3e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CT 78565 |||||| || | || |||||||| ||||||||||| ||||| ||||| ||||| || Sbjct 20983 GAACTCCCCAGAGAGCACCCGGCGCACGTAGATGTTGGAGGTGTAGGGCTC-AAAGCACT 20925 Query 78566 CGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAAT 78625 ||||||| |||| ||||||| ||| |||||||| |||||||| || ||||| || || | Sbjct 20924 CGTTGTTGCCCAGGATCTGGCTGGTGGAGGCGGTGGGCATGGGGGCCACCAGCAGCGAGT 20865 Query 78626 TCCG 78629 | || Sbjct 20864 TGCG 20861 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/162 (74%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 79553 CCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGT 79612 |||||| |||||| || || |||||||| |||||||||| || | |||||| || ||| Sbjct 17170 CCGTGTCGTTGAAGACCCGCAGCATGGGGACGATGCCGTTGGAGGTGCCGTTGGTGCCGC 17111 Query 79613 TGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATT--CCGATGCCCCCGGACCA 79670 ||| | ||| | | || ||||| | ||| |||| |||||||| || | | Sbjct 17110 GGATGTAGGAGCCGGTGGAGCGGATGTT-GTGCA-TGGACAGCCCGATGCCGCCCGCGGA 17053 Query 79671 CTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712 |||||||||| ||||||||||| ||||| || |||||||| Sbjct 17052 CTTGGAGATGCAGGCGCACTCCTTCAGCGTGTCATAGATGCC 17011 >seq1200 Length=20974 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 ||||| | || ||||||||||| ||||| ||| | ||||||||||||| ||| |||| Sbjct 5184 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCGGGCCTGACCTTCAGCAAC 5243 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| || ||||| || ||||||||||| Sbjct 5244 GAGCTCATCTCCCGTGATGAGGGCCTCCA 5272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548499766699440