Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq947 178 1e-39 seq584 140 4e-28 seq583 125 8e-24 seq186 107 2e-18 seq930 93.3 5e-14 seq2126 84.2 2e-11 >seq947 Length=48402 Score = 178 bits (196), Expect = 1e-39 Identities = 175/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| |||||||| ||||| || ||||||||||| || || || ||||| ||||| | Sbjct 31508 TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 31567 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||| | ||| |||||||||| || |||||||||||||| || || || ||||||| Sbjct 31568 ACACCATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGC 31627 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 |||| || || ||||| || ||||| || ||||| | || ||||| || ||||| || Sbjct 31628 AGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACAACA 31687 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || |||| || |||||||| Sbjct 31688 TCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGG 31733 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || |||||||| ||||| || || |||||||| || || || ||||| ||||| Sbjct 32040 ATACAGATCTTTGTGAAGACCCTGACTGGCAAGACGATCACGCTGGAGGTGGAGTCGTCA 32099 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||||||||| || |||||||||||||| || || || |||||| Sbjct 32100 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 32159 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||||| || ||||| || ||||| || Sbjct 32160 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCCGACTACAAC 32219 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || |||| || |||||||| Sbjct 32220 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGCCTGCGCGGTGG 32266 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || |||||||| || || |||||||| ||||| Sbjct 33721 ATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCTTCA 33780 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 33781 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 33840 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| || ||||||| ||| ||||| || || || || Sbjct 33841 CAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGGCTGATTACAAC 33900 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || |||| | |||||||| Sbjct 33901 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCTTGCGCGGTGG 33947 Score = 170 bits (188), Expect = 2e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| |||| || ||||| ||||| | ||||||||||| || || || ||||| |||| Sbjct 33258 CTATGCTGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGT 33317 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | || | |||| ||| ||||||| || ||||||||||||||||| || || || | Sbjct 33318 CCTCGGACACTATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTG 33377 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 |||||||||| || || ||||| || ||||| || || |||| || ||||| || |||| Sbjct 33378 ACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACT 33437 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||| ||||| || || || ||||| || |||| || |||||||| Sbjct 33438 ACAACATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGG 33489 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || ||||| || || ||||| || Sbjct 31079 CAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTTATTTTCGCGGGCAAGCAGCTG 31138 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || ||||| || ||||| || |||| ||||| ||||| || || | || Sbjct 31139 GAGGACGGGCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTG 31198 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || || ||||| Sbjct 31199 CTGCGCCTGCGTGGTGG 31215 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || ||||| || ||||| || ||||||| || Sbjct 32861 GGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 32920 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| || || || ||| | || |||| || ||| Sbjct 32921 ACCCTGGCCGACTACAACATCCAGAAGGAGTCAACCCTGCATTTGGTGCTGCGCCTGCGC 32980 Query 27628 GGTGG 27632 ||||| Sbjct 32981 GGTGG 32985 Score = 82.4 bits (90), Expect = 9e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 ||| |||| || |||||||| || | ||||||||||| ||||| || ||||| ||||| Sbjct 32490 ATATTGCAGATTTTTGTCAAAACCTTGACCGGCAAGACAATTACGCTCGAGGTGGAGTCG 32549 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG-AATTCCT 27516 || | |||| ||| | || || || ||||||||||||||||| || |||| Sbjct 32550 TCAGACACTATTGAAAACGTAAAAGCCAAGATTCAGGACAAGGAGGGTAAGTCCT 32604 >seq584 Length=13061 Score = 140 bits (154), Expect = 4e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || ||||||||||| || ||||||||||| ||||| || ||||| ||||| | Sbjct 155 TGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTGGAGGTGGAGTCGTCAG 96 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||||| ||| ||||||| || || |||||||||||||| || || || ||||||| Sbjct 95 ACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 36 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 |||| || || || ||||| ||||| || |||||| Sbjct 35 AGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAT 1 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || |||||||| ||||| || ||||| | || Sbjct 639 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGC 580 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 579 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGC 520 Query 27628 GGTGG 27632 || || Sbjct 519 GGCGG 515 >seq583 Length=2907 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27451 GAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 ||||| ||||| || | ||||| ||| ||||||| || || ||||| |||||||| Sbjct 2905 GAGGTGGAGTCGTCAGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGC 2846 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 | ||| || ||||||||||| || || || ||||| ||||| || ||||| | || ||| Sbjct 2845 ACTCCCCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACC 2786 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || || ||||| || |||| ||||| ||||| || || || || |||| || ||||| Sbjct 2785 CTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGC 2726 Query 27631 GG 27632 || Sbjct 2725 GG 2724 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || |||||||| ||||| || ||||||| || Sbjct 2178 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 2119 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || ||||| |||| || ||| Sbjct 2118 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACACTGCACCTAGTGCTGCGCCTGCGC 2059 Query 27628 GGTGG 27632 || || Sbjct 2058 GGCGG 2054 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || ||||| ||||| || || |||||||| || || |||||||| ||||| | Sbjct 2518 TGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCGTCGG 2459 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 | | ||||| || ||||||| || ||||||||||||||||| Sbjct 2458 ACACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGG 2416 >seq186 Length=14886 Score = 107 bits (118), Expect = 2e-18 Identities = 149/208 (72%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT-- 27465 ||| || ||| ||||||| | | |||| |||| || ||| |||| || ||||| | Sbjct 7389 GCAGATATTTTTCAAGACCGTCAGCGGCGAGACAATCACTATTGACGTGGAGTCCTCTTC 7330 Query 27466 -GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||| ||| | ||||||| || |||||||||||||| || || || | ||| | Sbjct 7329 TGACAGCGTTGAGAGCGTGAAGGCCAAGATTCAGGACAAGGAAGGCATCCCGCACGACGA 7270 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| ||| | ||||| || ||||| || ||||| | | ||||| || ||||| || Sbjct 7269 GCAGCGCCTACTATTTGCGGGCAAGCAGCTGGAGGACGGGCACACCCTGGCCGACTACAA 7210 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || ||||| || || ||| | ||| Sbjct 7209 CATACACAAGGAGTCGACGCTTTACCTA 7182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || |||||||||||||| || || || || ||||| || Sbjct 4562 CAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTG 4503 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| | |||||||| || ||||| || |||| |||| Sbjct 4502 GAGGACGGGCGTACCCTGGCCGACTACAACATCCAGAAGG 4463 >seq930 Length=55056 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 32188 GGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTC 32247 || ||||| || || |||||| ||||||||||| ||||| ||| |||||||||||||| Sbjct 21452 GGCCAGTTCGGTACGCGGCTCCAGGGTGGCAAGGACGCTGCCAGCCCCCGTTACATCTTC 21511 Query 32248 ACCCGTCT--CGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCA 32305 ||||| || ||| || ||||||| | || ||| | | | || |||||| |||| | Sbjct 21512 ACCCGCCTGGAGCAGCT--GACGCGCCACATGTTCCATGAGGCTGATGATGCGCTGCTGA 21569 Query 32306 AGTACAATTTTGATGACGGTCAGCGGGTCGAGCC 32339 ||||| ||| || || ||| | ||||||| Sbjct 21570 AGTACCTGGATGAGGAGGGCCAGAGCATCGAGCC 21603 >seq2126 Length=41412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTG 80794 |||| ||||| | | |||| ||||||||||||||||| || |||||||| | || || Sbjct 19881 CCTGCACGCCCAGGCCGATGGGGCGGTGGCGCTTGTTGGAGCGCTCGGCGGTCTCAACTG 19822 Query 80795 GGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCAT 80854 |||| |||| ||||||| |||||||||||| || || | | || || || | Sbjct 19821 GGTAGTAGTTGACGTCGATGATCTTGTTCAGGTTGCGCGTCACCGCGCTTGCCACCTCGT 19762 Query 80855 GAAGTTTCTGAAAGTCGAA 80873 | || |||| |||||| || Sbjct 19761 GCAGCTTCTCAAAGTCAAA 19743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570284372459120