Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq947 102 5e-17 >seq947 Length=48402 Score = 102 bits (112), Expect = 5e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||| || || |||||| || ||||| || || | || || || Sbjct 33480 AGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 33421 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || |||||||| || | ||||| ||||| ||||| | |||||| Sbjct 33420 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 33361 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || || | ||| ||||| | |||||| |||| || Sbjct 33360 TTGTC-CTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCCAGCGT 33302 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 || || || ||||| || || |||||||||||||||| Sbjct 33301 GATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||| || || |||||| || ||||| || || | || || ||| Sbjct 31724 AGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 31665 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || |||||||| || | ||||| ||||| ||||| | |||||| Sbjct 31664 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 31605 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| | |||||| |||| || Sbjct 31604 TTGTCCTGGATC-TTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGCGT 31546 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 || || || ||||| | || |||||||| ||||||| Sbjct 31545 GATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||||| || |||||| || ||||| || || | || || ||| Sbjct 32257 AGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 32198 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| ||||| || || | |||||| Sbjct 32197 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 32138 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | ||| |||||| |||||| |||| || Sbjct 32137 TTGTCCTGGATC-TTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGT 32079 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || | || |||||||| ||||| ||| Sbjct 32078 GATCGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTATG 32039 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| ||||| ||| || || |||||| || ||||| ||||| | || || || | Sbjct 33935 CGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGACCA 33876 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 || || || || || || ||||| || | ||||| ||||| || || | ||||||||| Sbjct 33875 TCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTG 33816 Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 || |||| || | || || | || |||||| |||||| || | || || Sbjct 33815 TCCTGGATC-TTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACCTCAAGCGTGAT 33757 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || |||||||||||||||||| Sbjct 33756 GGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCATG 33720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314715595614683