Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq3544 549 2e-151 >seq3544 Length=2542 Score = 549 bits (608), Expect = 2e-151 Identities = 686/937 (73%), Gaps = 10/937 (1%) Strand=Plus/Plus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| ||||| | || | || | ||| | | ||| | |||||||||||||| | Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATCGTTGCATTTATTGCAGCACC 176231 |||||||| | | | || || | | ||| ||||| ||| |||||||| ||||| Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTAC-TGTATTTATTATTGGTTTTATTGCTGCACC 1729 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 ||||| ||||| || ||||| || || |||||| |||| ||| || | || || ||||| Sbjct 1730 TCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAA 1789 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 ||| || | || || | | || | ||||| || || || | |||||||||||||| Sbjct 1790 CATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAAT 1849 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| || || | ||||||||| | || || || || || |||||| | | || Sbjct 1850 TTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGT 1909 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAG 176471 | ||| || | |||||||| | ||||| ||||| || | ||||||||| || | | Sbjct 1910 TTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCG 1969 Query 176472 ACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGC 176531 |||| ||||||||||||||| ||| || || || || || ||| |||| || | || Sbjct 1970 TTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGC 2029 Query 176532 AGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCAT 176591 || ||| | | || || |||||||||| ||||| ||||||||||||||| | || || Sbjct 2030 TGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTAT 2089 Query 176592 TTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCC 176651 ||| ||||| ||||| || ||| |||||||||||||||| || ||||| || |||||||| Sbjct 2090 TTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCC 2149 Query 176652 ATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGG 176711 |||||| |||||||| || || ||||| |||||||| || | || || || ||||| || Sbjct 2150 ATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGG 2209 Query 176712 AAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGG 176771 | || |||||||| ||| || | || || || ||||||||||| ||| || Sbjct 2210 TTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGG 2269 Query 176772 TTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGG 176831 |||||||||||| ||||||||||| || |||||||| || || || ||||| ||||| || Sbjct 2270 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGG 2329 Query 176832 TCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGC 176891 |||| | || ||||| ||||||||||| || ||||| | | |||||||| | || Sbjct 2330 TCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGC 2389 Query 176892 AGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAA 176951 || | || ||||| || || ||||| ||||| | ||| ||| || |||||||| || Sbjct 2390 TGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 2449 Query 176952 CCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG----ACAACTCTGGTAAAGTGATTC 177007 | | ||||| |||||||||||||| || || ||| |||| ||| || ||| Sbjct 2450 CTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAA----GGTCGTGTAATTA 2505 Query 177008 CTACATGGGGAGATATCCTTAACCGTGCAAACCTTGG 177044 || |||| || || |||||||||| |||||||| Sbjct 2506 ACACTTGGGCTGACATTATTAACCGTGCTAACCTTGG 2542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603466858024320