Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq947 167 5e-36 seq584 131 4e-25 seq583 127 5e-24 seq186 96.9 8e-15 >seq947 Length=48402 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || ||||| | ||||| Sbjct 32251 AGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCATCC 32192 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || |||||||| || | || ||||||||| Sbjct 32191 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 32132 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || |||||||| || || ||||| || ||||||||| Sbjct 32131 TGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTGATCGTC 32072 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||| || Sbjct 32071 TTGCCAGTCAGGGTCTTCACAAAGATCTGTAT 32040 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| || |||||||| ||||| || ||||| | ||||| Sbjct 33932 AGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGACCATCC 33873 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || || ||||| || |||||||| |||| || ||||||||| Sbjct 33872 TCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 33813 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||||||||| || || ||||| || ||||| ||| Sbjct 33812 TGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACCTCAAGCGTGATGGTC 33753 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 33752 TTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 Score = 165 bits (182), Expect = 2e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| || |||||||| || || || ||||| | || || Sbjct 31718 AGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTCC 31659 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || |||||||| || | || ||||||||| Sbjct 31658 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 31599 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||||||||| ||| || ||||| || ||||| ||| Sbjct 31598 TGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTC 31539 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 || || || || ||||| ||||| | ||||| Sbjct 31538 TTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 150 bits (166), Expect = 4e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| || |||||||| || || || ||||| | |||||| Sbjct 33474 AGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 33415 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || |||||||| || | || ||||||||| Sbjct 33414 TCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 33355 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || ||||| ||| || ||||| || ||||| ||| Sbjct 33354 TGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCCAGCGTGATGGTC 33295 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 || || || | ||||| ||||| | ||||| Sbjct 33294 TTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 31200 AGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTCC 31141 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| |||||||| || |||||||| || | || ||||||||| Sbjct 31140 TCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 31081 Query 211023 TG 211024 || Sbjct 31080 TG 31079 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| || |||||||| || || || ||||| | ||||| ||||||||| Sbjct 32961 TGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCCAGCTGC 32902 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||||| || ||||| ||||| || |||||||| || Sbjct 32901 TTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGGGG 32867 >seq584 Length=13061 Score = 131 bits (144), Expect = 4e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||||||||||||| |||||||| ||||| || |||||||| || | || ||||| Sbjct 1 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 60 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||||||||||| ||||| || || |||||||| || || ||||| || || || Sbjct 61 GTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAAT 120 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 ||||| || || || ||||| ||||| | ||||| Sbjct 121 GGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 530 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 589 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| ||||| || |||||||| || Sbjct 590 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 633 >seq583 Length=2907 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 2739 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTCC 2798 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || ||| || ||||| ||| Sbjct 2799 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGAGTGCCCTCCTTATCC 2858 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 |||||||| ||||| || || |||||||| || Sbjct 2859 TGGATCTTGGCCTTCACATTCTCAATGGTGTCTGA 2893 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | ||||| Sbjct 2069 AGCACTAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 2128 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| ||||| || |||||||| || Sbjct 2129 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 2172 >seq186 Length=14886 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 |||| ||| || ||||| || || ||||| || || || ||||| || || |||||| Sbjct 7183 AGGTAAAGCGTCGACTCCTTGTGTATGTTGTAGTCGGCCAGGGTGTGCCCGTCCTCCAGC 7242 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| || || | ||||| || | ||| | || | |||||||||||||| ||| Sbjct 7243 TGCTTGCCCGCAAATAGTAGGCGCTGCTCGTCGTGCGGGATGCCTTCCTTGTCCTGAATC 7302 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || |||||| | || | | |||| |||| || || || | |||||| |||| Sbjct 7303 TTGGCCTTCACGCTCTCAACGCTGTCAGAAGAGGACTCCACGTCAATAGTGATTGTCTCG 7362 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGC 211112 || ||| ||||| | ||| | |||| Sbjct 7363 CCGCTGACGGTCTTGAAAAATATCTGC 7389 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || || ||||| | || || |||||||||||||| |||||||| Sbjct 4465 TTCTGGATGTTGTAGTCGGCCAGGGTACGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 4524 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || |||||||| || | || ||||||||||| Sbjct 4525 AGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 4562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159097776680615