Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq947 105 5e-18 >seq947 Length=48402 Score = 105 bits (116), Expect = 5e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 |||||||||| || || ||| | || || || || ||||| || || || || ||| ||| Sbjct 33264 TGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 33323 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| ||| | || | || | || ||||| || || | ||||| || || Sbjct 33324 ACACTATTGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGCATCCCGCCTGACCAG 33382 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || ||||| | ||||| | | ||| |||||| Sbjct 33383 CAGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACTACAAC 33442 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 33443 ATCCAGAAGGAGTCTAC 33459 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||| || || || ||||| || || || || ||||| || || || || ||| ||| Sbjct 31508 TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 31567 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| | || ||| | || | || | | ||||| || || | ||||| || || Sbjct 31568 ACACCATCGAGAATGTGAAGGCTAAGA-TCCAGGACAAGGAGGGCATCCCGCCTGACCAG 31626 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || ||||| |||| ||||| | | ||| |||||| Sbjct 31627 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACAAC 31686 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 31687 ATCCAGAAGGAGTCTAC 31703 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 || ||||| || || || ||||| || || || |||||||| || || || || || | Sbjct 32040 ATACAGATCTTTGTGAAGACCCTGACTGGCAAGACGATCACGCTGGAGGTGGAGTCGTCA 32099 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || || || || Sbjct 32100 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGACCA 32158 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || ||||| || | ||||| | | ||| ||||| Sbjct 32159 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCCGACTACAA 32218 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 32219 CATCCAGAAGGAGTCTAC 32236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337994559734708