Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq947 152 1e-31 seq3199 145 2e-29 seq583 129 1e-24 seq584 116 9e-21 seq3201 109 1e-18 seq3158 107 5e-18 seq3198 100 7e-16 >seq947 Length=48402 Score = 152 bits (168), Expect = 1e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| || || || || |||| ||||| ||||||| || Sbjct 32260 CGCAGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 32201 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||| || |||||||| || || ||||| || || || ||||| || || || || Sbjct 32200 CGCCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCC 32141 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||||| || ||||||||||| | ||||| || | | Sbjct 32140 TCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGC 32081 Query 225673 GTGATCGTCTTGCCCGTCA 225691 |||||||||||||| |||| Sbjct 32080 GTGATCGTCTTGCCAGTCA 32062 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || || || || || |||| ||||| ||||||| || Sbjct 31727 CGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 31668 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| || || |||||||| || || ||||| || || || ||||| ||||| || || Sbjct 31667 CGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCC 31608 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||||| ||||||||||| |||| ||||| || | | Sbjct 31607 TCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGC 31548 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 31547 GTGATGGTCTTGCCGGTCA 31529 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || || || || || |||| ||||| ||||||| || Sbjct 33483 CGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 33424 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||||||||||| || || ||||| || || || ||||| ||||| || || Sbjct 33423 CGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCC 33364 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||||||| || || ||||| |||| ||||| || | | Sbjct 33363 TCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCCAGC 33304 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| || || Sbjct 33303 GTGATGGTCTTGCCGGTCAAGGTCTT 33278 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || || || || || |||| |||||||| |||| || | ||||| Sbjct 33933 CAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGACCATC 33874 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || || || || || || || ||||| || ||||| || |||||||| Sbjct 33873 CTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 33814 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| |||||||||||||| | ||||| || | |||||| || Sbjct 33813 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACCTCAAGCGTGATGGT 33754 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| ||||| || || Sbjct 33753 CTTGCCAGTCAAGGTCTT 33736 >seq3199 Length=4258 Score = 145 bits (160), Expect = 2e-29 Identities = 205/283 (72%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT-ATAAG 7505 ||| |||||||||||| ||||| ||| | ||||||||| | ||||| || ||| || | Sbjct 2448 TATCTAATATTTGGTGCTTTTTCAGGTGTAATAGGTACTCTGTTTTC-ATTATTAATCCG 2390 Query 7506 GTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGT 7565 | |||||||| || || |||| ||||| |||||||| ||| | || || || Sbjct 2389 TATGGAATTAGCACAACCTGGAAATCAAGTATTGGGTGGTAATCATCAATTATATAATGT 2330 Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTT-ATGCCGGTTATGATAG 7624 || ||||| || |||| || | ||||| || |||| |||| ||||| | | | | | Sbjct 2329 AATAATTACTGCTCATGGTTTATTAATGATATT-TTTTATGTTAATGCCAGCTCTATTTG 2271 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | ||||| || ||||| || |||||| | | ||||| || || |||||||| || || Sbjct 2270 GTGGTTTTGGTAATTGGTTTGTTCCTATTTTAATTGGAGCACCAGATATGGCATTCCCCC 2211 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||| ||||||| || ||| |||| ||||| ||||| Sbjct 2210 GTTTAAATAATGTAAGTTTCTGGTTATTACCACCTTCTTTATT 2168 >seq583 Length=2907 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||||| || || |||| ||||| ||||||| || Sbjct 2730 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 2789 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| || || |||||||| ||||||||||| || || || |||||||| ||| | || Sbjct 2790 CGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGAGTGCCC 2849 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||||| || |||||||| ||||||| || ||||||||||| | ||||| || Sbjct 2850 TCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTC 2905 >seq584 Length=13061 Score = 116 bits (128), Expect = 9e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || |||||||| ||||||||||| || || || ||||| || || || || ||||| Sbjct 1 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 60 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| ||||||||| ||||||| || ||||||||||| | ||||| || | ||| || Sbjct 61 GTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAAT 120 Query 225678 CGTCTTGCCCGTCA 225691 |||||||| |||| Sbjct 121 GGTCTTGCCGGTCA 134 >seq3201 Length=8120 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||||||||| ||||| ||||| || || || ||||| || ||||||||||||||||| || Sbjct 5382 GAATATTTGGCCATCTGTAATTGAAATTACGTTTGTTGGAATATAAGCAGAAACATCTCC 5441 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||| | |||||||| || |||| || |||||||| Sbjct 5442 AGCTTGTGTTTCAATTACAGGTAAAGCAGTTAAAGAACCACCACC 5486 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 |||| | | || ||||| |||| |||| ||| || ||||||||| | |||||||||| Sbjct 5708 CAATTCTTGGCACCATATTCAGGATGTGCTATGGGTGAATATTTTCGTGATAATGGTATG 5649 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAAT 5118 || || ||||| || || ||||||||||||||||||| Sbjct 5648 CACGCCTTAATTATTTATGATGATTTAAGTAAACAAT 5612 >seq3158 Length=11629 Score = 107 bits (118), Expect = 5e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||||||||| || ||||| || || || |||||||| |||||||||||| Sbjct 11146 AAGATTTGACCATCAGTAATTGAAATAACGTTAGTTGGAATATAAGCCGAAACATCACCT 11087 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 |||||||||| |||| |||||| || || | ||||| ||| || || | |||| Sbjct 11086 TCTTGTGTTTCAACAATAGGTAAAGCAGTCATACTTCCACTACCTAATTTATCATTT 11030 >seq3198 Length=6291 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||||| |||| |||||||||||||||||||||||||||| || |||| Sbjct 2576 AGGTGGCACAGAATAGGGGGTGGCGACTGTTTACTAAAAACACAGGACTCTGCAAAGTGA 2635 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 | | ||||||||||||||||||| Sbjct 2636 ATACATGATGTATAGGGTCTGACAC 2660 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || | ||||| | || ||||||||||||| |||||| ||| | | | Sbjct 5473 TGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGTTCCACCACTTGTGTGAGCCC 5532 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACGC 7854 ||||| || |||||||||||| |||||| |||| | |||||| ||| |||| |||| Sbjct 5533 CCGTCTATTCCTTTGAGTTTTAGTCTTGCGACCGTACTCCTCAGGCGGACCATTTAACGC 5592 Query 7855 GTTAGCT 7861 ||||||| Sbjct 5593 GTTAGCT 5599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192475415253794