Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq3544 630 9e-176 seq3157 385 6e-102 >seq3544 Length=2542 Score = 630 bits (698), Expect = 9e-176 Identities = 701/933 (75%), Gaps = 2/933 (0%) Strand=Plus/Plus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 || || || |||||||| |||||| | ||||| | || | ||||||||||| | Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTG-CTTCATCGTTGCCTTCGTCGCTGCTCC 183314 |||||||| ||| | || ||||||| | ||| || || ||| || | ||||| || Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTA-CTGTATTTATTATTGGTTTTATTGCTGCACC 1729 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 |||||| || || || || ||||| || || || | || || | | || || ||||| Sbjct 1730 TCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAA 1789 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 ||| || ||||||| || ||||| |||| || || ||||| | |||||||| || || Sbjct 1790 CATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAAT 1849 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 |||||||| || ||| | || || ||| | ||||||||||||||||||||| | | || Sbjct 1850 TTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGT 1909 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | ||| || |||| || | | | || |||||||||||||||||| | |||| ||| Sbjct 1910 TTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCG 1969 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 | | |||||||||||||||||| ||| |||||| || ||||| |||||||| || Sbjct 1970 TTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGC 2029 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| | | || ||| ||||||||||||||||| |||||||||||| | ||||| Sbjct 2030 TGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTAT 2089 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 ||| || || || | ||| |||| ||||||||||| || |||||||| |||||||| Sbjct 2090 TTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCC 2149 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 ||||||||||| ||||| |||||||| || |||||||| | || ||| ||||| || Sbjct 2150 ATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGG 2209 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGG 183854 ||| | || ||||| || || |||||||||| ||||| || || ||| ||| Sbjct 2210 TTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGG 2269 Query 183855 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGG 183914 |||||| ||||||||||||||||| || |||||||| || || ||||| || ||||| || Sbjct 2270 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGG 2329 Query 183915 TCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGC 183974 |||| | || ||||| |||||||| |||||||| |||||||| | |||||||| | || Sbjct 2330 TCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGC 2389 Query 183975 TGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAA 184034 ||||||||| || || | || ||||| |||||| | ||| || |||||||||||||| Sbjct 2390 TGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 2449 Query 184035 CCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACAC 184094 | | || || || ||||||||||| || | | ||| ||||||||||| | ||||| Sbjct 2450 CTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACAC 2509 Query 184095 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGG 184127 ||||| ||| || | ||||||||| ||||| Sbjct 2510 TTGGGCTGACATTATTAACCGTGCTAACCTTGG 2542 >seq3157 Length=2513 Score = 385 bits (426), Expect = 6e-102 Identities = 602/861 (70%), Gaps = 0/861 (0%) Strand=Plus/Plus Query 185955 GGATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 186014 || ||||| || | | || || ||||| || ||||||||||| || || || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 186015 TCTGGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACA 186074 ||||| ||| | ||||| || ||||||||| | ||| |||||| ||| |||| || || Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 186075 ACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAAT 186134 || ||||| || |||||||| || || || || || || | || ||| ||| Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 186135 TTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT 186194 ||| | || || ||||| || || || ||| | ||||||||||||| | | | ||| Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 186195 TGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAAT 186254 ||||||||||| | ||||| ||| | | || |||| ||| | || || || ||| | Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 186255 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATC 186314 ||| || || || || | |||| ||| || ||||| ||||| || || |||||||| Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 186315 AGTCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTC 186374 ||| ||| || ||||| || || || ||||| ||||| | || || ||| | Sbjct 1994 GCACGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCTT 2053 Query 186375 TTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCC 186434 |||||| ||| ||| | || ||||| | || || || ||||| || || || Sbjct 2054 TTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAGT 2113 Query 186435 TTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACG 186494 ||||| || ||||| || || | ||| | || || ||||||| || || |||||||| Sbjct 2114 TTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGACA 2173 Query 186495 TTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCA 186554 || |||||||| || ||||||||||| || ||| | | ||||| || || || || ||| Sbjct 2174 TTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGCA 2233 Query 186555 ATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTC 186614 || ||||||| || |||||||||||||||| ||||||||| || || || || ||| Sbjct 2234 ATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTTC 2293 Query 186615 AAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTC 186674 || || | | || |||| ||||||||||||||| | || || || || | || Sbjct 2294 CGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTTT 2353 Query 186675 TGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTC 186734 ||||| || || || || | || ||| ||||| |||||| | || ||||| ||| | Sbjct 2354 TGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTTG 2413 Query 186735 TTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAAC 186794 || ||||| || | |||||||||| | | ||||| | ||||| | || | || Sbjct 2414 TTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAAT 2473 Query 186795 CTTCGTGCTTATGACTTTGTA 186815 | ||||| ||||| || ||| Sbjct 2474 TTACGTGCATATGATTTCGTA 2494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622042010262120