Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq3544 637 5e-178 seq3157 488 6e-133 seq3158 114 1e-20 seq3155 82.4 9e-11 >seq3544 Length=2542 Score = 637 bits (706), Expect = 5e-178 Identities = 698/925 (75%), Gaps = 2/925 (0%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 || ||| | ||| | ||| || || || ||||| || |||||||||| || || | Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCC 164046 |||||||| | | |||| ||||| ||| || || || | || || | ||| || Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTAC-TGTATTTATTATTGGTTTTATTGCTGCACC 1729 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 |||||| || || ||||| ||||| || || || | ||||| | | || || ||||| Sbjct 1730 TCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAA 1789 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 ||| || |||||||| |||| ||| |||| || ||||| ||| ||||||||||||| || Sbjct 1790 CATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAAT 1849 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 |||||||| || | ||||||||| | || ||||||||||||| |||| | | || Sbjct 1850 TTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGT 1909 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | ||| || | || || || | ||||| ||||||||||||||||||||||||| ||| Sbjct 1910 TTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCG 1969 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 | | ||||||||||||||||| ||||| || || |||||||| ||||| || ||| Sbjct 1970 TTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGC 2029 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| | | || ||| |||||||||||||||| ||||||| |||||| | || || Sbjct 2030 TGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTAT 2089 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 ||||| || ||||| | |||| | || ||||| || || || |||||||| |||||||| Sbjct 2090 TTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCC 2149 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 ||||| ||||| || || || ||||| ||||| ||||| | || ||| ||||| || Sbjct 2150 ATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGG 2209 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| | || |||||||| || ||||||| || || ||||| || || ||| ||| Sbjct 2210 TTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGG 2269 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 |||||| || ||||| ||||||||||| |||||||||||||| |||||||| ||||| || Sbjct 2270 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGG 2329 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 |||| | ||||||||||| ||||| || |||||||| ||||| | |||||||| | || Sbjct 2330 TCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGC 2389 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||||||||| |||| ||||| |||||| | || || || |||||||| || Sbjct 2390 TGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 2449 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 | | ||||| |||||||||||||| || | | ||| || |||||||| | ||||| Sbjct 2450 CTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACAC 2509 Query 164827 CTGGGCAGACGTTCTCAACCGTGCT 164851 ||||| ||| || | ||||||||| Sbjct 2510 TTGGGCTGACATTATTAACCGTGCT 2534 >seq3157 Length=2513 Score = 488 bits (540), Expect = 6e-133 Identities = 639/884 (72%), Gaps = 8/884 (1%) Strand=Plus/Plus Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206 |||||||| || | ||||||| ||||| | ||||| || || || || || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 165207 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACT 165266 ||||| | | ||||| || |||||||||||||| |||| | ||| |||| || ||| Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 165267 ACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAAC 165326 || || || || |||||||||||| ||| | || || || ||| | || ||| || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 165327 TTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTA 165386 ||| | ||||||||||||||||| ||||| | ||||||||||||| | | | || Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 165387 TGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACT 165446 ||||||||||| | ||||| || || | || ||||| ||| | || || || ||| || Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 165447 TTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTG 165506 ||| || || || || | |||| ||||| ||||| |||||||| || |||||| | Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 165507 GCACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 165562 ||||| || ||| |||||||||| || || ||||| || || | || ||||| Sbjct 1994 GCACGT----TCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGC 2049 Query 165563 TGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACC 165622 | | || ||| |||||| | || || || | || ||||| ||||| || ||||| Sbjct 2050 TCTTTTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACC 2109 Query 165623 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 165682 || || || ||||| || ||||| ||| | | || ||||||| || |||||||| Sbjct 2110 TAGTTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTG 2169 Query 165683 GACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTC 165742 ||| | ||||| ||||| |||||||| || || ||| | ||||| || ||| | ||||| Sbjct 2170 GACATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTC 2229 Query 165743 TGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACAC 165802 ||| |||||||||| |||||||| |||||| | | ||||||||| || || || || Sbjct 2230 TGCAATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATAC 2289 Query 165803 TTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCG 165862 |||| || ||| | || || | ||| ||||| ||||| | || || || || || Sbjct 2290 TTTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCG 2349 Query 165863 TTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTAT 165922 ||| |||||||| ||||||||| | ||||| ||||| |||||| | ||||||||||| Sbjct 2350 TTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTAT 2409 Query 165923 GCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACT 165982 | | || ||||| || | || ||||||| ||| |||||||| | ||||| | ||| | Sbjct 2410 GTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATT 2469 Query 165983 CAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTG 166026 ||| | ||||| |||||||| || || || || ||| | |||| Sbjct 2470 AAATTTACGTGCATATGATTTCGTATCACAAGAAATTCGTGCTG 2513 >seq3158 Length=11629 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 166029 GAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGT 166088 || ||||| || |||||||| |||||||| ||||| || || | ||||| || | ||| Sbjct 2 GAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCGT 61 Query 166089 GCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTG 166148 || ||| ||||| || ||||||||||||||| || |||| |||||||| || || || Sbjct 62 GCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTA 121 Query 166149 CCAAGAGGCAACGCACTTTAA 166169 ||| | || ||||| |||||| Sbjct 122 CCACGTGGAAACGCTCTTTAA 142 >seq3155 Length=10462 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/74 (85%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 160906 CGGGGTGTAGCGCAGA--GGTAGCGCGGCTGTTTTGGGAACAGCAGGTCGCAGGTTCGAT 160963 |||| |||||||||| |||||||| ||||||||||||||| | ||||||||||||| Sbjct 5006 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAAGTCGCAGGTTCGAA 4947 Query 160964 CCCTGTCACCCCGA 160977 ||||||| ||||| Sbjct 4946 TCCTGTCATCCCGA 4933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557628950047320