Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3544 645 4e-180 seq3157 426 2e-114 seq3158 109 7e-19 >seq3544 Length=2542 Score = 645 bits (714), Expect = 4e-180 Identities = 688/906 (76%), Gaps = 2/906 (0%) Strand=Plus/Plus Query 177625 AATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCT 177684 || ||| | || |||||||||| ||||| | ||||| ||||| | | | || || Sbjct 1638 AACCGTTTATACATCGGTTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACAGCAACT 1697 Query 177685 ATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGA 177743 | |||| || || | | ||| | ||||| |||||||| || || || || |||||||| Sbjct 1698 A-CTGTATTTATTATTGGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTATCCGTGA 1756 Query 177744 ACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTC 177803 || || | ||||| | | || || |||||||| ||| |||||||| || ||||| | Sbjct 1757 GCCAGTATCAGGTTCTTTATTATACGGTAACAACATTATTACTGGTGCTATTATTCCTAC 1816 Query 177804 TTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTG 177863 ||| || ||||||||| | |||||||| || || |||||||| ||||| | || || || Sbjct 1817 TTCAAATGCTATTGGTATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGACGAATG 1876 Query 177864 GCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGC 177923 | | || || |||||||||| |||| | | | | ||| || | |||||||| | || Sbjct 1877 GTTATATAACGGTGGTCCTTACCAATTAATCGTTTGCCATTTTATCATCGGTATTTGCGC 1936 Query 177924 ATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGT 177983 || ||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||| Sbjct 1937 TTATATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGT 1996 Query 177984 AGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCA 178043 ||| || || ||||| || || || || |||||||||| || |||| ||| ||||||| Sbjct 1997 AGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCA 2056 Query 178044 AGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 178103 ||||||||| ||||| | |||||| | ||||| ||| || ||||| | |||| |||| Sbjct 2057 AGGTTCTTTTTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCATGATTGT 2116 Query 178104 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGT 178163 ||||||||||| || |||||||| |||||||| ||||||||| | || || |||||||| Sbjct 2117 ATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGT 2176 Query 178164 CTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCG 178223 ||||||||||| | || ||| ||||| ||||| | || ||||| || || |||| Sbjct 2177 ATTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCTTATTCG 2236 Query 178224 TGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 178283 |||||| || || |||||| | ||| ||||||||| ||||||||||||||||| || Sbjct 2237 TGAAACTACTGAAAACGAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAAC 2296 Query 178284 CTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTT 178343 |||||||||||||| ||||| || ||||||||||| | || |||||||| || || || Sbjct 2297 TTACAACATCGTTGCAGCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTT 2356 Query 178344 CAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 178403 |||||||| ||||| | |||||||| | || || ||||||||||| |||| ||||| Sbjct 2357 TAACAACTCTCGTTCATTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTT 2416 Query 178404 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 178463 ||||||| | ||| || || |||||||| ||| | ||||| |||||||||||||| || Sbjct 2417 CACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAACCAATC 2476 Query 178464 CATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGG 178523 | | ||| || || || | ||||| ||||| ||| || | ||||||||| Sbjct 2477 AGTTGTAGATTCACAAGGTCGTGTAATTAACACTTGGGCTGACATTATTAACCGTGCTAA 2536 Query 178524 TCTTGG 178529 ||||| Sbjct 2537 CCTTGG 2542 >seq3157 Length=2513 Score = 426 bits (472), Expect = 2e-114 Identities = 632/892 (71%), Gaps = 3/892 (0%) Strand=Plus/Plus Query 178814 AACACTACAGAAACAAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCG 178873 || ||| ||||| || | || |||||||| | | || || ||||| ||||| || Sbjct 1616 AAAACTCAAGAAA-AACGCGGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCG 1674 Query 178874 GTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGG 178933 || || || || || ||||| || | | || |||||||||||||| | ||| | || Sbjct 1675 CTTTGTATTCGTAGGGTGGTCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGG 1734 Query 178934 CGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTC 178993 | ||| | || || || ||||| || || || ||||||||||| || | ||| || Sbjct 1735 TGCATGGTTTACAGGAACTACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTC 1794 Query 178994 GTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGG 179053 ||| | || || || ||||| | ||||| || || || || || ||| | | | || Sbjct 1795 ATATTTAGAAGGTTGCAATTTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGG 1854 Query 179054 ACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCA 179113 ||||| || | | || |||||||| ||||| || || ||||| || ||| || Sbjct 1855 TCATTCTTTATTATTCCTTTGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCA 1914 Query 179114 ACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCAT 179173 | | || || || ||| ||||| || || || ||| | || | ||| || ||||| || Sbjct 1915 ATTAGGCGGCCTTTGGGCTTTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTAT 1974 Query 179174 GCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTT 179233 |||||| || |||||||| |||||| ||| ||||||||||| || ||||| ||||| Sbjct 1975 GCTTCGTCAATTTGAAATTGCACGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTT 2034 Query 179234 TTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTC 179293 ||| | ||||||||| | ||||| |||||||| | || || || | || || || Sbjct 2035 TTCAGCGCCAATTGCTCTTTTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGG 2094 Query 179294 GTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACA 179353 ||||| ||||| || ||||| ||||||||||| ||||| ||| | | || | || Sbjct 2095 TTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCA 2154 Query 179354 GGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGG 179413 || || || |||||||| | || || || || ||||||||||| || ||| | | || Sbjct 2155 AGGTTTTCATAACTGGACATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGG 2214 Query 179414 CGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAG 179473 || ||| | |||| ||| ||||||||||| |||||||| || || || |||||||| | Sbjct 2215 TGGCGCACTTCTTTCTGCAATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGG 2274 Query 179474 TGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGAT 179533 || | ||||| ||| || || | || ||||||| ||| || |||||||| | Sbjct 2275 AGATGGTGCTAATACTTTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTT 2334 Query 179534 GGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTG 179593 || || || || ||||| |||||||| || |||||| | || || ||||| ||||| Sbjct 2335 TGTAACAGCAAATCGTTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTG 2394 Query 179594 GCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTAT 179653 | |||| |||||||||||||| ||||| || | |||||||||| | |||||| | Sbjct 2395 GTTACACTTCTTTATGTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGT 2454 Query 179654 TATTGGTCTTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCACAAGAGAT 179704 ||||| | ||| |||| ||| | || ||||| || || |||||||| || Sbjct 2455 AGTTGGTTTAGCA-TTAAATTTACGTGCATATGATTTCGTATCACAAGAAAT 2505 >seq3158 Length=11629 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 179714 AGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACG 179773 ||| |||||||| || || || |||||||| || || || ||||| ||||| ||| | || Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 179774 TGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATT 179833 |||||||||||| | || ||||| |||||||| ||||||| ||||| || || || Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 120 Query 179834 GCCAAGAGGCAACGCTCT 179851 ||| | || |||||||| Sbjct 121 ACCACGTGGAAACGCTCT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596279986030160