Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq947 183 6e-41 seq583 109 1e-18 seq584 100 6e-16 seq1958 96.9 7e-15 seq610 96.9 7e-15 >seq947 Length=48402 Score = 183 bits (202), Expect = 6e-41 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || |||||||| | || || || |||||||||||||| || Sbjct 33489 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 33430 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| ||||| || || ||||||||||||| || || |||||| ||| Sbjct 33429 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 33370 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || || | || ||||||||||| | || || Sbjct 33369 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACC 33310 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 || || ||||| ||||| || ||||| ||||| || || ||||||| Sbjct 33309 TCCAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 174 bits (192), Expect = 3e-38 Identities = 174/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || |||||||| | || || || |||||||||||||| || Sbjct 31733 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 31674 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || ||||||||||||| || || |||||| ||| Sbjct 31673 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 31614 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | ||||| |||||||| | || || Sbjct 31613 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACC 31554 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 || || ||||| ||||| || |||| ||||| || || ||||||| Sbjct 31553 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| ||| || |||||||| | || || || ||||||||||| ||||| Sbjct 33947 CCACCGCGCAAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCC 33888 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || ||||| |||| || || |||||| ||| Sbjct 33887 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGA 33828 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | ||||| ||||| |||| || || Sbjct 33827 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACC 33768 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 33767 TCAAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 32266 CCACCGCGCAGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 32207 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || ||||||||||||| || || |||||| || Sbjct 32206 AGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 32147 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | || || ||||| || | || || Sbjct 32146 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACC 32087 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| ||||| || || ||||| || Sbjct 32086 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTAT 32040 Score = 93.3 bits (102), Expect = 9e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| || ||||| ||||||||| | || |||||||| || | || || | Sbjct 32598 TACCCTCCTTGTCCTGAATCTTGGCTTTTACGTTTTCAATAGTGTCTGACGACTCCACCT 32539 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 |||| || || ||||| || ||||| || || || || ||||||| | ||| Sbjct 32538 CGAGCGTAATTGTCTTGCCGGTCAAGGTTTTGACAAAAATCTGCAATATCA 32488 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || |||| || | ||| || || |||||||||||||| || Sbjct 31215 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 31156 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || || || || | || || |||||| || Sbjct 31155 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGGG 31096 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 31095 ATGCCCTCCTTGTCCTG 31079 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || |||| ||| | || || || |||||||||||||| || Sbjct 32985 CCACCGCGCAGGCGCAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCC 32926 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||||||||| || || || || |||||||| | || || |||||| Sbjct 32925 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCA 32872 >seq583 Length=2907 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || |||||||||||||| || Sbjct 2724 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2783 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || || ||||||| || || ||||| ||| Sbjct 2784 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 2843 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042 | |||||||| || |||||||| || || || | || || ||||| || Sbjct 2844 GTGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGA 2893 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 2054 CCGCCGCGCAGGCGCAGCACTAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2113 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||||||||| || || || || |||||||||| || || |||||| Sbjct 2114 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCA 2167 >seq584 Length=13061 Score = 100 bits (110), Expect = 6e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 282944 ATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTT 283003 |||||| || || || || || ||||||| || || |||||| || || |||||||| Sbjct 1 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 60 Query 283004 GTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGAT 283063 ||| ||||||||||| || || | || || ||||| || | || || || || || || Sbjct 61 GTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAAT 120 Query 283064 CGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 ||||| || |||| ||||| || || ||||||| Sbjct 121 GGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || ||||||||||||||||| Sbjct 515 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 574 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || || |||||||||| || || |||||| Sbjct 575 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCA 628 >seq1958 Length=49106 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGATT 168813 |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | Sbjct 952 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGATTCCCCGTTG 893 Query 168814 CGTCGC 168819 || ||| Sbjct 892 CGGCGC 887 >seq610 Length=15909 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGATT 168813 |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | Sbjct 15717 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGATTCCCCGTTG 15658 Query 168814 CGTCGC 168819 || ||| Sbjct 15657 CGGCGC 15652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046690235175754