Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq947 152 1e-31 seq584 109 1e-18 seq583 98.7 2e-15 >seq947 Length=48402 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 177918 ATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGC 177977 ||||| || ||||| ||||| || | || || || || ||||| || |||||||| | Sbjct 33260 ATGCTGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCC 33319 Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || ||||| || ||||| || || |||||||||||||| || || ||||| || ||| Sbjct 33320 TCGGACACTATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGAC 33379 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| || || ||||| ||||| || ||||| |||||||| | || || ||||| || Sbjct 33380 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACTAC 33439 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| |||| || || || || |||||||| || Sbjct 33440 AACATCCAGAAGGAGTCTACCCTGCATCTGGT 33471 Score = 147 bits (162), Expect = 5e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 177919 TGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCT 177978 |||| || || || ||||| || || || || || || ||||| || |||||||| || Sbjct 31505 TGCTGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCT 31564 Query 177979 CAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACC 178038 | |||||||||||||| || || ||||| |||||||| || || ||||| || |||| Sbjct 31565 CGGACACCATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCTGACC 31624 Query 178039 AGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATA 178098 |||| || || ||||| ||||| || ||||| || || || | || || ||||| || | Sbjct 31625 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACA 31684 Query 178099 ACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || |||| || || || || |||||||| || Sbjct 31685 ACATCCAGAAGGAGTCTACCCTGCATCTGGT 31715 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || |||||||| || |||||||| |||||| Sbjct 32043 CAGATCTTTGTGAAGACCCTGACTGGCAAGACGATCACGCTGGAGGTGGAGTCGTCAGAC 32102 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || ||||| || |||||||| Sbjct 32103 ACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 32162 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | || || ||||| || ||| || Sbjct 32163 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCCGACTACAACATC 32222 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 32223 CAGAAGGAGTCTACGCTCCACCTGGT 32248 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || || || ||||| || |||||||| |||||| Sbjct 33724 CAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCTTCAGAC 33783 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || || || || || |||||||| Sbjct 33784 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAG 33843 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||||| || ||||| | || || || ||||| ||| || Sbjct 33844 CGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGGCTGATTACAACATC 33903 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||| || Sbjct 33904 CAGAAGGAGTCTACCCTGCATCTGGT 33929 >seq584 Length=13061 Score = 109 bits (120), Expect = 1e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || || || || |||||||| |||||| Sbjct 153 CAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTGGAGGTGGAGTCGTCAGAC 94 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || |||||| |||||||| || || ||||| || |||||||| Sbjct 93 ACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 34 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || || |||||||| || || ||||| || ||| Sbjct 33 CGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAT 1 >seq583 Length=2907 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 177966 GAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGA 178025 |||||||| ||||||||||| ||||| || || ||||| ||||| || || || Sbjct 2905 GAGGTGGAGTCGTCAGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGC 2846 Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 | || || |||||||| || || |||||||| || || ||||| || || || | || Sbjct 2845 ACTCCCCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACC 2786 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || ||| |||| || || || || ||||| || || Sbjct 2785 CTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGT 2742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203674891335294