Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq661 223 7e-53 seq232 136 8e-27 seq556 131 4e-25 seq207 87.8 4e-12 >seq661 Length=126702 Score = 223 bits (246), Expect = 7e-53 Identities = 842/1303 (65%), Gaps = 51/1303 (4%) Strand=Plus/Minus Query 318397 GCGGCTGATTGCCCGGTAATCTGGACAACACCCCCACCAACAGCCCAGTTCTCAACACAT 318456 ||||| || || ||||| |||| || || || ||||||| ||| ||||| | ||| Sbjct 92635 GCGGCAGACTGACCGGTGATCTCGAGCTTTCCTCCTCCAACAGTCCATGTCTCACCGCAT 92576 Query 318457 ACGTTTTTAACAAACTCGTTACTATGGCTAATGACCACAACACCTCCGCCAAAGTTCTTA 318516 ||| | | | ||||| | || || || ||||||||||| || || | ||| Sbjct 92575 ACGGTGTCCAAGAACTCTTGGGAGTGAGAAACAACGACAACACCTCCACCGAACTCCTTG 92516 Query 318517 AGTGCTTCGGCCATTGCTCCGAGACTCTCGCGGTCAACGAAGTTGGTCGGTTCGTCCAAA 318576 || || | | ||| || ||||| || || |||| | |||| || || || |||| Sbjct 92515 AGAGCGGCAGACATGGCACCGAGGGATTCACGATCAAGGTAGTTTGTAGGCTCATCCAGG 92456 Query 318577 ACGATCACGTGGGGTTGTTGCCATAGAGCAGCGCCAATAACCAATTTCAGCTTTTGCCCG 318636 ||||| | || || |||||||| | ||||| || | || | || | ||| || || Sbjct 92455 ACGATGATATGTGGCTGTTGCCACATGGCAGCTCCGAGCACAAGCTTGACCTTCTGACCT 92396 Query 318637 CCAGATAGACCACGAATGCGAGAATGAGTTGTAAATTCAGGGTCGAGCCCAACATTTGCC 318696 || || |||||||| ||| |||| || |||| || |||| ||||| || | || | Sbjct 92395 CCGGAAAGACCACGGATGTGAGAGTGTGTTGCGAACTCAGACTCGAGTCCGAGATCGCCG 92336 Query 318697 A-TATGTTCTTCCACGTTCTTTGCGGTCAGTGGCTT---GAACATACCATTTGCAACGGC 318752 | || ||| || ||||| || |||| ||| || | |||||| || | || Sbjct 92335 AGCATTTTC-TCAACGTTGGCAGCAGTCAATGGTTTACCCATCATACCGGCCGCGGCAGC 92277 Query 318753 TTCTTTGGTATCAATATCGTTCAGAAGTTTTCCGAAACCATACTCCTCCAGGCGTTCGCG 318812 ||| ||| |||||| ||||| | | || || |||| ||| || || | | || Sbjct 92276 CTCTCTGGCATCAATCTCGTTAACCATCTTCTCGTAACCCATCTCTTCGAGCTGAGCACG 92217 Query 318813 GGACATCCATTGGGT-AGTCTCA------TCGTTTTTCCACTGAACCTCGTACTCGTAAG 318865 || || ||| ||| ||| || | || | ||||| |||||||||||||||| Sbjct 92216 GGTCAACCAAGAGGTCTGTC-CAGCTGGGGCATTCTGCCACTCAACCTCGTACTCGTAAC 92158 Query 318866 ATTTTTTCAGCTTGCGGCGACCAAGAATCTTGTCAAGAATTTTCTTCACTCCGTCAACGA 318925 || |||||||| ||||| |||| ||| |||| | ||| || || | Sbjct 92157 CCTTCTTCAGCTTACGGCGGTTGAGAAGCTTCTCAACAGAGCGCTTGACACCCT------ 92104 Query 318926 CTTTAGTGTCATACATCTTCT-TTAGTTCTTCTTCG-TTGTTCTTCCTAG---AAACGAC 318980 || ||| | || ||||| || || ||| | | |||||||| | |||||| Sbjct 92103 GTTCGGTGGC---CACCTTCTGTTCCTTGAGCTTGGCCTCTTCTTCCTCGGTCAAACGA- 92048 Query 318981 GTCAA---------GGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTG 319031 |||| ||| ||| |||| || |||| || |||||||| || || ||||| Sbjct 92047 -TCAACCTTGCTCTGGGCTTCTCTGTCCTCTCCGGTAGCGTAACGCCACTGAATGTACTG 91989 Query 319032 GTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGC 319091 ||| || ||| | || | |||| ||| || || |||||||| ||||| || || || || Sbjct 91988 GTTTGGAGTCTTATCCAAATGACTCTCAATATGATGGAAAGCGTGCTGGGCAACATATGC 91929 Query 319092 AAGACGCATATTTGGATGCTTCCAAACACTACCGAT--GGTGGCTTCCATTTGTCCCGTG 319149 | ||||| || || |||||||| ||| | | || |||| |||| | ||| ||| Sbjct 91928 TACACGCAAGTTAGGGTGCTTCCACACA-AATCCATCATTTGGC-TCCAACTCTCCAGTG 91871 Query 319150 AGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCACCACA-CCGATCCTGGA 319208 || | || || | ||| || || || ||| ||| | ||| |||| | | | ||| Sbjct 91870 AGAAGTTTGATCATGGTAGACTTACCAGCTCCG-TTTGGTCCAACACAGGCAACACGGGA 91812 Query 319209 GTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTT 319268 ||| || || |||||| | |||| | | || || || || || ||||| Sbjct 91811 GTTGAGAGACACCTGGAGTGTGACGTCATTGAGAATCTTCTTGTCAGTTCCTGGATAACC 91752 Query 319269 GAACCCCACACCGCGTAGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAA 319328 || ||| || | | ||| | ||| || | |||||| || | || ||||| ||||| Sbjct 91751 AAAGTGCACTCCTCTCATCTTGAGGATAGCTCTGTCCTTGGAGTTAATGCCCTCAAGGAA 91692 Query 319329 CCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTA--ACTCGCT 319386 || ||||| || | |||| |||||| | || | |||||| ||| | Sbjct 91691 TCCTGGCTCTGGAAGGACCCACTTGGTCTGAGCATCCTCCAAATTGTAGTAGGACTTG-- 91634 Query 319387 GATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGG 319446 | || || | | ||| || | || | || ||||| |||||| | ||| | Sbjct 91633 GCCTCTGGTCTGTGCTTGACAAGTTCAGCCAAGTTTCCACGGTACTTGCGGATCTT---G 91577 Query 319447 TTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGAC 319506 || ||||| |||||| ||||| || ||| | ||| || |||||||| ||| Sbjct 91576 CGTCCCTCATAATGAATAATACCAGTGCACACCTTGTCCAAGAATCCAGAGTCGTGCGAC 91517 Query 319507 ACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTA 319566 ||||| || | | |||||| | ||| | ||||| |||| ||||||| ||||| Sbjct 91516 ACAATGACAGATGTCACGTCCGTCAGGGATGTGAGGTAGTCAACCAACCACTGAACGTTG 91457 Query 319567 GACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATT 319626 | || ||||||||| || ||||| || | | || | | || |||| | ||| Sbjct 91456 GTAACGTCAAGATGGTTTGTAGGCTCATCCAACAACATAATATCAGCCTTCATCAACATA 91397 Query 319627 GCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAG 319669 ||||| || | ||| || ||||| ||||| ||||| || |||| Sbjct 91396 GCACGGGCCAAAGCAAGCTTCATCTTCCATCCTCCAGAGAGAG 91354 Score = 87.8 bits (96), Expect = 4e-12 Identities = 181/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 319765 TCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGATCGTGT 319824 |||||||||| |||||||||| || || || | || ||||| | |||| ||||| Sbjct 91255 TCATCATTGGTGATGAAGTCAACGACTGCAGTCTCAGCCTCGGAGGCATCGATGTCGTGC 91196 Query 319825 TCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGGCCGTTCACA 319884 || || || |||| | | ||| | ||||| || || | ||| || || || Sbjct 91195 TCAACATACACAGTGCGGAGCTCTTCCTTTGGTGGGAATCCATCGACCTGTCCATTGGCA 91136 Query 319885 ATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTT 319944 || || | ||||| || || || || |||||||| ||||| ||||| || || | | Sbjct 91135 ATGGCTCTCATCAATGTGGACTTTCCGCATCCGTTTGGTCCACAGAGACCATAACGCTGT 91076 Query 319945 CCGCGTTTCAGGTTGAACCGC-GTGTTGTTCAGAAGAATTTTTCCACCATATGCCAGAGA 320003 || || |||| || ||| | | || ||| ||| | || ||||||| || || || Sbjct 91075 CCACGCTTCAAGT-GAAGGGTAGCATTCATCAAAAGCACCTTGGCACCATAAGCAAGGGA 91017 Query 320004 AAATTCACAATCACACAGATCCTCACC 320030 ||||| || | || ||||||||||| Sbjct 91016 GAATTCGCAGTTGCAAAGATCCTCACC 90990 >seq232 Length=44964 Score = 136 bits (150), Expect = 8e-27 Identities = 371/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 230085 GAACGAGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGC 230144 |||| |||| || ||||||| || | | || | ||| | || |||||| | ||||| Sbjct 11514 GAACAAGCTGTTCCATGCCATCGAGACAGTACCAGTGGTGAAGAAGAAGGCAGATTGGGC 11573 Query 230145 TCAGAAATGGCTAGAACCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGT 230204 || |||| | || | | | || || || ||||| | || || | | || || Sbjct 11574 CATGAGATGGATTGAGTCCAGCGATTCTTTCGCAGAGCGATTGGTTGCATTCGCCTGCGT 11633 Query 230205 TGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGT 230264 |||||| ||| | || ||||| ||||| ||||| | ||||| || ||| | Sbjct 11634 TGAAGGAATTTTCTTCTCCGGATCCTTCTGTGCCATTTACTGGCTCAAAAAGCGAGGGCT 11693 Query 230265 GATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACA 230324 | | || || | | || |||||||| ||| ||| || ||||| ||||| ||| Sbjct 11694 GCTTCCAGGATTGACATTCTCCAACGAGTTGATCTCTCGTGATGAGGGGCTCCAC--ACA 11751 Query 230325 G-TTCGGCGAGCTT-ATGTATTCAAAGCTCCAGAACAAGCT-ACCATTCGAGACGGTCAA 230381 | || || || | || || || |||| | |||||||| | || |||| || Sbjct 11752 GATTTTGCATGCCTCATCTACTCCTTGCTCAACAACAAGCTCAGCAAG-GAGAGAATCGC 11810 Query 230382 ACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATG 230441 | | ||| | || | || |||||| || |||||||| ||||| ||||| | || || Sbjct 11811 AGATATCGTGACGAACGCCGTTGAATTAGAGAAGGAGTTTATTTGCGACGCCCTGCC-TG 11869 Query 230442 TCG-CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACC 230500 ||| ||| || ||||||||||| || ||| ||||||||| ||||| ||||| || Sbjct 11870 TCGACCTGATCGGCATGAACGCGAGGCTCATGTCACAGTACATTGAATTTGTAGCTGATA 11929 Query 230501 GCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTA 230560 | || | ||||| || || | || || |||||||| | || || || | | | Sbjct 11930 GACTTCTGGTTGCCCTGGGGAATGACAAGGTGTACAATGTTGCCAATCCATTCGATTGGA 11989 Query 230561 TGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATC 230620 |||| || ||||| | || || ||||| || |||||||| ||| | || | || || | Sbjct 11990 TGGAACTGATTTCTTTGCAGGGAAAGACAAATTTCTTCGAGAAGAGAGTTGGCGAGTACC 12049 Query 230621 AGAGGCCTGGTGTGATGAA 230639 | | | |||| |||||||| Sbjct 12050 AAAAGGCTGGAGTGATGAA 12068 >seq556 Length=75407 Score = 131 bits (144), Expect = 4e-25 Identities = 320/471 (68%), Gaps = 18/471 (4%) Strand=Plus/Minus Query 282395 GATAGGTGTGATGAACTTCTTCAAGAAA-CCTGGAATTTCTAGGAGACTGGGAAAACAGC 282453 ||| || |||||||| ||| |||||| |||||||||| || ||| ||| | || Sbjct 29971 GATTGGAGTGATGAA-TTCGATAAGAAAGCCTGGAATTTTCAGCAGAGATGGATAGAAGT 29913 Query 282454 TATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCA 282513 || || || ||||||| ||| || |||||||| ||| || |||| || |||| Sbjct 29912 GGTGCAAGAAATTCATGATAAGTCCCTTAATGTGAGATCCATCGTGATCCTGATCCGTCA 29853 Query 282514 TGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCGGTTTGAA 282573 ||||||||| || || |||| ||| || || | || || || || || | Sbjct 29852 TGATCATCAAGTGCCCATATCGCAGGGACTTGACATCCTCATAGACCTTTCCATGCTGGA 29793 Query 282574 GGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGAT---ACTTGCCACAG 282630 | |||||||| || |||| | |||||||| |||| ||||| ||| | ||| | Sbjct 29792 GCCCCAAAATCTGCTTGATATTGTTGATTTCTGCGTTGCCAGTGATTTGACTAG-CACTG 29734 Query 282631 ATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCTCGCGAC 282690 ||||| ||||| |||||||| || || || || || || || || |||| || | | Sbjct 29733 --GCATCTCGAACATTCAGCAATTTTCCTCGAAGTGGGAAGACTCCGTATCGATCTCTTC 29676 Query 282691 CGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGTCAAGATGA 282750 | || || |||| || || || | || ||| ||||||||||| |||| ||||| Sbjct 29675 CAACAACTGACAAACCACTGATGGCCAATGACTTTGCAGAATCTCCCTCTGTCAGGATGA 29616 Query 282751 GAGTACACATCTTACTATGATTTGTGCC-CGCCCATGCA---GCATCGTTTAGTTTAGGG 282806 | || ||| |||| | | |||| | || | | ||| || ||||| | | ||| ||| Sbjct 29615 GTGTGCAC-TCTTTCGA--ATTTCTTCCTCCCGCAT-CATTTGCATCATCCAATTTTGGG 29560 Query 282807 ATGCCGGACACTCG-GGACTTCTTGGCACCGTCGGTTTTCTTCAGTTCCTT 282856 || || | | || ||| |||||| |||||| ||| ||||||||||| Sbjct 29559 ATACCCAAGAGACGCTGAC-GCTTGGCCCCGTCGCCTTTTTTCAGTTCCTT 29510 >seq207 Length=84208 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 165258 CCATAGCTCAGTT--GGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACC 165315 ||||||||||||| |||||||||| |||||||||||||||||||||| |||||| | || Sbjct 84093 CCATAGCTCAGTTTCGGTTAGAGCGCTCGACTGTTAATCGAGAGGTCATCGGTTCAAGCC 84034 Query 165316 CGGTTGG 165322 || |||| Sbjct 84033 CGATTGG 84027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057812073034400