Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq32 136 3e-27 >seq32 Length=101482 Score = 136 bits (150), Expect = 3e-27 Identities = 360/542 (66%), Gaps = 6/542 (1%) Strand=Plus/Minus Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCT-CGATACAATTTGCG 18607 ||| ||||||| | || |||| || |||||||| | | | | |||| ||||||||| Sbjct 37158 GATAGAACAGGGACTGGGACGTATTCAAAATTTGGAAAG-ACGATGCGATTCAATTTGCG 37100 Query 18608 AAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTT 18667 || ||||||||| | || ||||||||||| |||||||| | | | |||||| | Sbjct 37099 GCATACATTTCCTCTCCTCACCACAAAGCGTGTCTTTTGGAGAGGGCTGGCAGAAGAGCT 37040 Query 18668 GTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACAT 18727 | ||||||||| || ||| || | | |||| | | | |||| || || || Sbjct 37039 CCTCTGGTTTATCAAAGGAAGTACCAATGCGACAGAATTATCAGACAAAGGAATCCATAT 36980 Query 18728 ATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACAC 18787 |||||| | | || || | ||| ||| || || |||| || | || | Sbjct 36979 TTGGGATGGAAATGGCTCTCGTGAATATCTTGATTCGATTGGCCTCACAGAGAGGGAGGA 36920 Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 |||||| ||||| || | || || || |||||| | || ||||| || || ||| | | Sbjct 36919 GGGGGATCTTGGGCCAGTGTATGGGTTTCAGTGGCGTCACTTTGGTGCAGAGTATTCAAA 36860 Query 18848 C-TGTCAATCAAACTATTTACAGC-AAGGAATCGATCAGCTGCAAACTGTTATAGATACA 18905 | ||| | | |||| || | || |||| ||||||| || | | | || ||| | Sbjct 36859 CATGT-ATGCCGACTA-TTCCGGCAAAGGGGTCGATCAACTCAATGATCTCATTCATAAA 36802 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 || || | ||||| | | | || || | || | | ||||||||| || | | Sbjct 36801 ATCAAGAATAACCCCAATGACAGGCGCTTGGTGCTAACCGCGTGGAATCCATTGGCTCTT 36742 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 || |||| ||||| |||||||||| ||| |||||||| |||||||| | || ||| Sbjct 36741 CCAGAGATGGCTCTACCACCATGTCACATGTTTTGTCAGTTCTACGTTGCTGATGGGGAA 36682 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT 19085 || ||| ||| | || ||| ||||| | || |||| || || ||||| || || || Sbjct 36681 TTGAGCTGTCAAATGTATCAGCGATCGTGCGACTTGGGACTCGGTGTACCATTTAATATA 36622 Query 19086 GC 19087 || Sbjct 36621 GC 36620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399499715319600