Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq232 215 6e-51 seq457 196 6e-45 >seq232 Length=44964 Score = 215 bits (238), Expect = 6e-51 Identities = 406/589 (69%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 ||||| ||||| ||| || ||||| || | | || || |||||||| || || | | Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || || | || || |||||||| ||||| | |||| | || || ||||| || ||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGG-CACAGAAGGATCCGGAGAAGAA 11644 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 ||||||||| || || || |||| | || ||| | || ||||| | || Sbjct 11643 AATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGACTCAAT 11584 Query 24314 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 ||| || || |||||||| |||||||| || || || | |||||| || |||| | Sbjct 11583 CCATCTCATG-GCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGA 11525 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 | || | ||| |||||| | ||| || | ||||| |||| || ||||||||||| | Sbjct 11524 ACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCT 11465 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | |||||| || |||||||| ||||| ||||| || ||| ||| ||||| | |||| Sbjct 11464 CGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATCT 11405 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | || || | |||||||| | | ||||| ||||| || || || ||| || |||| Sbjct 11404 GCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCAA 11345 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCA 24611 | || || | ||||| || |||| | | |||| || || | | | ||| | Sbjct 11344 AGAATGCAAGCACATGAGAGATGAAATGTCTCTCGT-TGTCATTCAATCCTTCCCAGTGC 11286 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 ||||| ||| | ||| || ||||| ||||||| || || ||||||||||| || Sbjct 11285 TTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTG 11226 Query 24672 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 ||||| | |||||| |||| ||| | || || || | || |||| || Sbjct 11225 TACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 >seq457 Length=513114 Score = 196 bits (216), Expect = 6e-45 Identities = 479/721 (66%), Gaps = 4/721 (1%) Strand=Plus/Plus Query 53941 ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 54000 ||| ||| |||||| | |||||||| | | | | ||||| ||||| ||||| Sbjct 208727 ATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGCTTCATTTGGACA 208786 Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 | ||| ||||||||||| || | | || | || |||||||||||| || ||||| | Sbjct 208787 AAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGGGATCCACA- 208845 Query 54061 AGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119 | | || || | |||||| | || ||| || || || |||||| | | || | Sbjct 208846 ACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCTTCCTCAATTCAA 208905 Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT 54179 | | | | |||||||| ||||| || |||||||| |||| | |||| | | Sbjct 208906 GCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCCTTTTCTCT 208965 Query 54180 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 54239 | ||||||||||| | ||||| || |||| ||| | || | | ||| || | || Sbjct 208966 TCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCATAGGTACAA 209025 Query 54240 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA 54299 ||||||| || | ||||| || || ||||| ||| | || | |||||| | Sbjct 209026 TACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGATATTATGCA 209085 Query 54300 TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 54359 | || ||||| || |||||||| | || ||||| | || || || | || |||| Sbjct 209086 TAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCAGAGTGTCAT 209145 Query 54360 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 54419 | ||||| || |||||||||| | ||||| | | ||| || ||| | || | | Sbjct 209146 AAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAAGCTGAGGGC 209205 Query 54420 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 54479 | ||| || ||||| || | || ||||| || ||||| |||||| | | ||| || | Sbjct 209206 GTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCTGAGACAGCA 209265 Query 54480 GATTGTACGTCTCGATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTGCGACACGC 54538 | | ||| ||||| || |||| || ||| || | ||| || ||||| |||| || | | Sbjct 209266 GGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-TGGATTCCAACTGAAACTCTC 209324 Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598 || | ||||||||| || || || |||| || | | ||||| || || Sbjct 209325 ATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAATATGAACGC 209384 Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658 |||| |||||| ||||||||||| | ||| || || || ||||| | ||| | ||| Sbjct 209385 TCCAGAGTTTTGAAACCAAAATAATCGTAATCGAAATCACGATCGTAGACAATCTCCGAG 209444 Query 54659 T 54659 | Sbjct 209445 T 209445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715069062400