Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq232 136 4e-27 seq354 87.8 2e-12 >seq232 Length=44964 Score = 136 bits (150), Expect = 4e-27 Identities = 355/533 (67%), Gaps = 9/533 (2%) Strand=Plus/Plus Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704 |||||||| ||||| ||||| || |||||||| | || ||||| || ||| ||| Sbjct 11221 ATGTACAAGAAGGCAGAGGCTTCCTTCTGGACAGCTGAAGAGGTTGATCTGGGAGGAGAC 11280 Query 116705 A-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | | ||| ||||||| | ||||| ||||||||| | ||||||||| || ||||| || Sbjct 11281 ATCAAGC-ACTGGGAAGGATTGAATGACAACGAGAGACATTTCATCTCTCATGTGCTTGC 11339 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 || || || || || |||||||| || |||||| ||| | || || |||| Sbjct 11340 ATTCTTTGCTGCATCTGATGGCATCGTAAATGAGAATTTGGGGGTACGATTTTTGAAGGA 11399 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGC-TTCTACGGCTTTCAGATCGCCATGGAGAACGTGC 116882 ||||||| | | ||||| | | || || || || || || |||||||| ||||| | | Sbjct 11400 GGTGCAGATCCCAGAGGC-CAGAGCTTTTTATGGATTCCAAATCGCCATTGAGAATATTC 11458 Query 116883 ACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCC 116942 | || |||||| ||| | || || ||| | | | | || ||| | Sbjct 11459 ATAGCGAGATGTATAGTCTCCTGCTTGAGACATACATCAAGGATCCTGTTGAAAAGAACA 11518 Query 116943 GTTTGTTGAACGCCATCGAGACGATGCC-GTGCGTCAAAGAGAAGGCCGAGTGGGCGCTG 117001 |||| | ||||||||||| | || ||| || || ||||||| || ||||| || Sbjct 11519 AGCTGTTCCATGCCATCGAGACAGTACCAGTG-GTGAAGAAGAAGGCAGATTGGGCCATG 11577 Query 117002 CGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTC 117061 | ||||| | ||| || | |||| ||||| |||| || ||||| ||| Sbjct 11578 AGATGGATTGAGTCCAGCGA---TTCTTTCGCAGAGCGATTGGTTGCATTCGCCTGCGTT 11634 Query 117062 GAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTC 117121 || || | ||||| || || ||| ||||| | |||||||| || || || || Sbjct 11635 GAAGGAATTTTCTTCTCCGGATCCTTCTGTGCCATTTACTGGCTCAAAAAGCGAGGGCTG 11694 Query 117122 ATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 | || || |||| ||| ||||||| | ||||| | || ||||| || || Sbjct 11695 CTTCCAGGATTGACATTCTCCAACGAGTTGATCTCTCGTGATGAGGGGCTCCA 11747 >seq354 Length=2136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| || |||| ||||| || || || ||| | || ||||| || ||||||| | Sbjct 2086 TCAAGTCGAAGATTCAGGACAAGGAAGGTATTCCCCCTGATCAGCAGCGTCTCATCTTTG 2027 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| ||||| || || | |||||| | || |||||||||||||||||| | | Sbjct 2026 CTGGCAAGCAGCTCGAGGATGGGCGCACGTTGGCAGATTACAACATCCAGAAGGAGTCTA 1967 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||| | ||| | |||||||| || || Sbjct 1966 CATTGCACTTGGTGCTTCGCTTGAGAGGAGG 1936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213532588800