Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq157 136 6e-27 seq429 118 2e-21 seq634 113 7e-20 >seq157 Length=134730 Score = 136 bits (150), Expect = 6e-27 Identities = 217/316 (69%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 202763 TCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTT 202822 || ||||| || | ||||||| ||| |||| || | ||| || || || || |||||| Sbjct 45970 TCGAATTTTCGCTTGCATCCTTGATAGTTCATGTAACGAATCTTCCCGAAAATGGGTCTT 46029 Query 202823 TCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATTT 202882 || |||| | |||||| || || || || |||||||| || ||||| |||||| Sbjct 46030 TCGCGCCATCCCTGATCATGGATTCCGCACATGGACCACATGATACCCACATAGCCATTT 46089 Query 202883 GGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCT 202942 |||||||| ||||| | |||| || || || | ||||| Sbjct 46090 GGATCACGCCCATCCAACTGCCATTTGTCGTTCAACCTGATGCCATAGTCTATTGCTTGC 46149 Query 202943 TCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGC 203002 ||||| |||| ||||||||| | || || || ||||||||||| | | |||||||| Sbjct 46150 TCTGGGGATTCTGTCCATTCCAGAATCTTCTTGGCCCAATACATGCGCAGGAATCCATGC 46209 Query 203003 ATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTTAAT 203062 |||||||| | || ||||| || |||| |||||||||||| | ||| || ||| | Sbjct 46210 ATTTTACCCGTCACAACCATTTCCTTCTGTGCTGCATTCCATAAGTCGTCGTGGGTTTTT 46269 Query 203063 GCATTTTCAAGTTGAT 203078 || | || || |||| Sbjct 46270 GCCCTCTCGAGCTGAT 46285 >seq429 Length=364352 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || || | || || || || || |||||||| ||| | || | || || Sbjct 146809 ACGATGCAGATTTTCGTTAAAACCCTGACGGGAAAAACTATTACTCTGGAAGTAGAGTCA 146868 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| ||| ||| | || ||| ||||| |||||||| || || ||||||||| Sbjct 146869 TCTGATACGATTGAGAATGTCAAGTCGAAGATTCAGGATAAAGAGGGGATCCCACCTGAT 146928 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || || | ||||| || ||||| || || || ||| | || || | | |||||| Sbjct 146929 CAGCAGAGATTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACCCTGGCGGATTAT 146988 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||||| || || |||||| | || || ||||| || || Sbjct 146989 AACATCCAAAAGGAGTCAACGTTACACTTGGTTCTTCGCTTGCGAGGGGGGAT 147041 >seq634 Length=251403 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| ||||| || || || || | ||| | || | | Sbjct 209421 ATGCAAATCTTTGTGAAAACACTCACAGGGAAGACCATCACCCTGGAGGTGGAGTCTTCT 209480 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || ||||| || || || || || ||||||||||| Sbjct 209481 GACACTATCGAAAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCTGATCAG 209540 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || ||||| || || || ||| | || ||||||| ||||||||| Sbjct 209541 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACATTAGCAGATTATAAC 209600 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || ||||||||||| | ||||| |||| || || Sbjct 209601 ATCCAAAAGGAGTCTACCTTGCATTTGGTCCTCCGTTTGAGAGGAGGAAT 209650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755447689984000