Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq457 136 7e-27 seq157 84.2 4e-11 >seq457 Length=513114 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 135592 ATTTATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCAT 135651 ||||| | |||| |||||||||||| | ||| || | | || ||||| ||||| Sbjct 411682 ATTTACAGAGATGAAGACGAGTGGAAATCTTGGCAAGCTAAAGGGGACACTGTTGTGCAT 411741 Query 135652 ATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTA 135711 ||||| || ||| |||||| |||| | | | || || || ||| | || ||||| || Sbjct 411742 ATAGATCTCCGGAAATGGGCAGATGCTATGGTCATTGCTCCTTTATCTGCTAATACTCTA 411801 Query 135712 GCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGAT 135771 || ||||||||| ||||| | ||||||||||||||||| | |||||| |||| ||||| Sbjct 411802 GCTAAAATAGCTCATGGTTTGTGCGATAATTTACTGACATGTATTGTGCGAGCTTGGGAC 411861 Query 135772 ACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGG 135819 ||||| ||| | || | || ||||||||||| |||||||| Sbjct 411862 TTCAACAAGCCAATGCTTCTGGCACCAGCAATGAATACCTTTATGTGG 411909 >seq157 Length=134730 Score = 84.2 bits (92), Expect = 4e-11 Identities = 179/262 (68%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 189450 TATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGA-AAAATGCATAGTTTTTTACGA 189508 ||||||| || |||| | | | ||||| | || || ||||||||| | || | || Sbjct 46252 TATGGAATGCAGCACAGAAGGAAATGGTT-GTGACGGGTAAAATGCATGGATTCCTGCGC 46194 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAA-CACCTGAAGACGCTTTGAGTTA 189567 ||||||||||| |||||||| || |||||||| |||| | || || | || | || Sbjct 46193 ATGTATTGGGCCAAGAAGATTCTGGAATGGAC-AGAATCCCCAGAGCAAGCAATAGACTA 46135 Query 189568 TAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 189627 | | ||| |||||| |||| | | | || || ||||| || || || || || Sbjct 46134 TGGCATCAGGTTGAACGACAAATGGCAGTTGGATGGGCGTGATCCAAATGGCTATGTGGG 46075 Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGG 189687 | |||||||| || |||||| | || ||| | ||| |||||||| || || || Sbjct 46074 TATCATGTGGTCCATGTGCGGAATCCATGATCAGGGATGGCGCGAAAGACCCATTTTCGG 46015 Query 189688 AAAGATAAGATATATGAATTAT 189709 ||||| | || ||||| ||| Sbjct 46014 GAAGATTCGTTACATGAACTAT 45993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923186644835200