Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq232 107 2e-18 >seq232 Length=44964 Score = 107 bits (118), Expect = 2e-18 Identities = 339/522 (65%), Gaps = 5/522 (1%) Strand=Plus/Minus Query 16271 ATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATA 16330 || |||||||| || ||||| | ||||| | || ||||| ||||| | ||| | || Sbjct 11726 ATCAACTCGTTGGAGAATGTCAATCCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATG 11667 Query 16331 GCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 || || || || || ||||| || |||||||| ||| ||||||||||||||||| Sbjct 11666 GCACAGAAGGATCCGGAGAAGAAAATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCT 11607 Query 16391 CCGTACGTTCTAtttttactttctatccattttttagcccaatttg-ctttttgtttAAC 16449 || | | || | || |||||| | | ||||||| || ||| || || | | Sbjct 11606 GCGAAAG---AATCGCTGGACTCAATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACC 11550 Query 16450 ACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATA 16509 || | | || |||| || |||| || | | || ||||| ||| || || Sbjct 11549 ACTGGTACTG-TCTCGATGGCATGGAACAGCTTGTTCTTTTCAACAGGATCCTTGATGTA 11491 Query 16510 AGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACC 16569 || || | || | ||||||||| || |||||||||||| || || || || || || Sbjct 11490 TGTCTCAAGCAGGAGACTATACATCTCGCTATGAATATTCTCAATGGCGATTTGGAATCC 11431 Query 16570 ATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTC 16629 |||||| ||| || || | || || || || |||| | | | | || || || Sbjct 11430 ATAAAAAGCTCTGGCCTCTGGGATCTGCACCTCCTTCAAAAATCGTACCCCCAAATTCTC 11371 Query 16630 GTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC 16689 || || || ||||| || ||||| || ||||| | || || |||| | | || Sbjct 11370 ATTTACGATGCCATCAGATGCAGCAAAGAATGCAAGCACATGAGAGATGAAATGTCTCTC 11311 Query 16690 GTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGT 16749 ||| || | | | ||||| | ||| | | ||| |||||||| | || Sbjct 11310 GTTGTCATTCAATCCTTCCCAGTGCTTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGT 11251 Query 16750 CCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 ||| || ||||| | ||||| || ||||||| ||| || || Sbjct 11250 CCAGAAGGAAGCCTCTGCCTTCTTGTACATTTCCCAGATTTC 11209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462506912368000