Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq232 122 2e-22 seq457 111 3e-19 >seq232 Length=44964 Score = 122 bits (134), Expect = 2e-22 Identities = 144/193 (75%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | ||||| ||||| || || || ||||||||||| | |||||||| ||||| Sbjct 12048 GTACTCGCCAACTCTCTTCTCGAAGAAATTTGTCTTTCCCTGCAAAGAAATCAGTTCCAT 11989 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| |||||||| ||||| |||||||||||||| | |||||| || || |||| | Sbjct 11988 CCAATCGAATGGATTGGCAACATTGTACACCTTGTCATTCCCCAG--GG--CAACCAGAA 11933 Query 157378 G----TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCG 157433 | || || ||||| | ||||||| || |||| | || || | || ||||| || Sbjct 11932 GTCTATCAGCTACAAATTCAATGTACTGTGACATGAGCCTCGCGTTCATGCCGATCAGGT 11873 Query 157434 CGACGGGAAGCGC 157446 |||| || || || Sbjct 11872 CGACAGGCAGGGC 11860 >seq457 Length=513114 Score = 111 bits (122), Expect = 3e-19 Identities = 403/622 (65%), Gaps = 13/622 (2%) Strand=Plus/Minus Query 248793 GATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATC 248852 ||||| ||||| ||||| || ||||||| |||| ||||||||| |||||| || Sbjct 209438 GATTGTCTACGATCGTGATTTCGATTACGATTATTTTGGTTTCAAAACTCTGGAGCGTTC 209379 Query 248853 GTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGT 248912 ||| | |||| | |||| ||||||| | ||||||||| | ||| |||| Sbjct 209378 ATATTTGCTCAGGGTCAATGGTCGTGTCGTGGAGAGGCCACAGCACATGCTCATGAGAGT 209319 Query 248913 GGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC-ACCGGAATGA 248971 | || || || |||||||| | || || | | ||||| ||| ||| | || Sbjct 209318 TTCAGTTGGAATCCACAAGGAGAATATTGATGCAGCCATTGAGACATACCACCTGC-TGT 209260 Query 248972 GTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAA-- 249029 | | | ||| | || |||||| | || || || ||||| |||||||| || || Sbjct 209259 CTCAGAGATGGTTCACGCATGCCTCTCCAACTCTGTTCAATGCCGGTAC--TCCACGCCC 209202 Query 249030 TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGA 249089 |||||| ||||||||| | | |||| | | || | | || ||||||||||| Sbjct 209201 TCAGCTTTCTTCGTGCTTTTTGATCTGCATGAAGAATGATAGTATTGAAGGCATTTATGA 209142 Query 249090 CACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTC 249149 ||| || || || || || || || || || || |||||||| || | Sbjct 209141 CACTCTGAAGGAGTGTGCTTGCATCTCCAAGAGTGCAGGGGGCATCGGTCTGTCTATGCA 209082 Query 249150 CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGT 249209 || ||| |||||| ||||| || || || |||||||| ||||||| || Sbjct 209081 TAATATCAGAGCGACTGGTTCTTATATTCGTGGAACAAATGGAACTTCGAATGGTATTGT 209022 Query 249210 ACCCCTCCTTCGATGCTTTGAGT-CCACCGCCAG----GTTCATCAACCAGGCCGGGCGC 249264 ||| | || || || || | | ||| ||||| ||| |||| ||| ||| Sbjct 209021 ACCTATGCTCCG-TGTGTTCAATGACACGGCCAGATATGTTGATCAGGGAGG-GGGGAAG 208964 Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 |||| || |||| |||||||| ||||| |||||||| ||||| || || | || Sbjct 208963 AGAAAAGGAGCGTTTGCCATGTACTTGGAGCCTTGGCACGCTGATATTTTCGACTGGCTT 208904 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 || |||| ||||| ||||||| || ||| || | || | |||||||| || Sbjct 208903 GAATTGAGGAAGAATCACGGCAAAGAAGAAGCGAGGGCAAGAGATTTGTTCTACGGGTTG 208844 Query 249385 TGGGTCTCCGACTTGTTCATGC 249406 ||| || | || | || |||| Sbjct 208843 TGGATCCCAGATCTCTTTATGC 208822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073754293283840