Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq232 199 4e-46 seq457 161 9e-35 seq634 102 7e-17 >seq232 Length=44964 Score = 199 bits (220), Expect = 4e-46 Identities = 591/901 (66%), Gaps = 23/901 (3%) Strand=Plus/Plus Query 57538 GATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAG 57597 |||| ||| |||| ||||| | ||| || || ||| | |||||||| |||||||| | Sbjct 11180 GATTCGTCTTGTTCCCGATCAAGTATAATGAAATCTGGGAAATGTACAAGAAGGCAGAGG 11239 Query 57598 CATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGA----TCTGAGCGATTGGGAT 57653 | || || ||||| | ||||| || || ||| |||| || ||| | ||||| Sbjct 11240 CTTCCTTCTGGACAGCTGAAGAGGTTGATCTGGG--AGGAGACATCA-AGC-ACTGGGAA 11295 Query 57654 TCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 | || || |||||| |||| || || ||| | || || || || ||||| Sbjct 11296 GGATTGAATGACAACGAGAGACATTTCATCTCTCATGTGCTTGCATTCTTTGCTGCATCT 11355 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAG 57773 ||||| || || || |||||||||| | | |||||| | || ||||| | | ||| Sbjct 11356 GATGGCATCGTAAATGAGAATTTGGGGGTACGATTTTTGAAGGAGGTGCAGATCCCAGAG 11415 Query 57774 GCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 || ||| ||||| ||||| ||| | |||||||| || | ||| || |||||| Sbjct 11416 GCCAGAGCTTTTTATGGATTCCAAATCGCCATTGAGAATATTCATAGCGAGATGTATAGT 11475 Query 57834 CTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATC 57893 || || | || || ||| | ||||| | || || | |||||| | || ||| Sbjct 11476 CTCCTGCTTGAGACATACATCAAGGATCCTGTTGAAAAGAACAAGCTGTTCCATGCCATC 11535 Query 57894 GAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCC 57953 || ||| | || | | | ||||||||||| ||| | || | |||||| | || Sbjct 11536 GAGACAGTACCAGTGGTGAAGAAGAAGGCAGATTGGGCCATGAGATGGATTGAGT---CC 11592 Query 57954 ACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCG 58013 | | | ||||| ||| | | | || |||||| ||| ||||| || ||||| || Sbjct 11593 AGCGATTCTTTCGCAGAGCGATTGGTTGCATTCGCCTGCGTTGAAGGAATTTTCTTCTCC 11652 Query 58014 GGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTT 58073 || ||| || || | ||| | || || || || ||| | || || |||| || Sbjct 11653 GGATCCTTCTGTGCCATTTACTGGCTCAAAAAGCGAGGGCTGCTTCCAGGATTGACATTC 11712 Query 58074 AGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 |||||||||||| || || || ||||| ||||| || |||||||| ||||| || ||| Sbjct 11713 TCCAACGAGTTGATCTCTCGTGATGAGGGGCTCCACACAGATTTTGCATGCCTCATCTAC 11772 Query 58134 TCTCACATTGTCAATA--AACCGACGC-GGGATCGCATCTTGGACATTATCACCGAGGCG 58190 || | | |||| | || | || ||| | ||| || || | || | || Sbjct 11773 TC---CTTGCTCAACAACAAGCTCAGCAAGGAGAGAATCGCAGATATCGTGACGAACGCC 11829 Query 58191 GTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAAC 58250 || | | || || |||||| | ||| ||||| || || | | || |||| |||||| Sbjct 11830 GTTGAATTAGAGAAGGAGTTTATTTGCGACGCCCTGCCTGTCGACCTGATCGGCATGAAC 11889 Query 58251 AATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT---G 58307 | |||||| |||||||||| ||||| || || |||||| || | | || | Sbjct 11890 GCGAGGCTCATGTCACAGTACATTGAATTTGTAGCTGATAGACTTCTGGTTGCCCTGGGG 11949 Query 58308 ATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTC 58367 | | || | || ||||| ||||| || |||| ||| | ||||| || | Sbjct 11950 AAT-GACAAGGT--GTACAATGTTGCCAATCCATTCGATTGGATGGAACTGATTTCTTTG 12006 Query 58368 GAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 |||| |||||||| || ||||| || | |||| |||| || ||||| || |||||| Sbjct 12007 CAGGGAAAGACAAATTTCTTCGAGAAGAGAGTTGGCGAGTACCAAAAGGCTGGAGTGATG 12066 Query 58428 A 58428 | Sbjct 12067 A 12067 >seq457 Length=513114 Score = 161 bits (178), Expect = 9e-35 Identities = 599/931 (64%), Gaps = 22/931 (2%) Strand=Plus/Plus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||| | ||||| || || | || || | || || |||||||| || ||| Sbjct 208533 GTGTACTCAATGATTTCAGTGCACAAGTTACTGGATTTAATTGTGCCCAAGTT---CTG- 208588 Query 23123 TTGCTT----TTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178 ||| || |||| ||| ||||||||| |||||||||| || | |||||||| || Sbjct 208589 TTGATTAGACTTTCTGTTGGCAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAAC 208648 Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT----GAAC--ACGTCGCACGTA 23232 || | |||| ||| || ||| | || || | | || ||| |||||| Sbjct 208649 TTGAGCTTCGAGGATGGCAAACCAAAGCTGTTGGGCCTTGATGGACTTACGA-GCACGTC 208707 Query 23233 CCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGC 23292 ||| | | || || || || || | ||||||| | || | |||||||| Sbjct 208708 CCTCGCGT-----TCATATTTCAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGC 208762 Query 23293 CAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352 || || || | || | ||||| | | |||| | || |||||| | | Sbjct 208763 AAGACCAGGGGCTTCATTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTG 208822 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||| ||||| || ||||| | ||||||||| || | || | | | || ||||| Sbjct 208823 CATAAAGAGATCTGGGATCCACAACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTT 208882 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||| ||||| |||| || | |||| || | || || ||||| ||||| | ||| Sbjct 208883 GCCGTGATTCTTCCTCAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTA 208942 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | ||||||||| || |||||| || |||||||| || || | |||||||| || Sbjct 208943 CATGGCAAACGCTCCTTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATT 209002 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 | |||| | ||||| || || | ||| || || | || | || | | || Sbjct 209003 GAACACACGGAGCATAGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGA 209062 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 ||| | |||| | || || | | ||| ||||| || | || || || Sbjct 209063 ACCAGTCGCTCTGATATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCA 209122 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 || || | ||||||||||| || ||||| || || || || | || | || ||| Sbjct 209123 AGCACACTCCTTCAGAGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAA 209182 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 || |||||||| | || | || ||| |||| |||||| || || ||| || Sbjct 209183 AAAGCACGAAGAAAGCTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATG 209242 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 ||| || ||| | |||| || | ||| || || ||||| |||||||| | ||| Sbjct 209243 CGTGAACCATCTCTGAGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTT 209302 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG-CCGT 23891 ||| || || | | || | ||| | ||||| || || ||||| | || ||| || | Sbjct 209303 GTGGATTCCAACTGAAACTCTCATGAGCATGTGCTGTGGCCTCTCCA-CGACACGACCAT 209361 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951 | | ||| || ||||||||| | || ||||| || |||||||| || || | || | Sbjct 209362 TGACCCTGAGCAAATATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTAATCGAAAT 209421 Query 23952 CACGATCGTGCACTATGGCCGAATTCAAACG 23982 ||||||||| || || |||| | ||| || Sbjct 209422 CACGATCGTAGACAATCTCCGAGTCCAAGCG 209452 Score = 96.9 bits (106), Expect = 3e-15 Identities = 321/494 (65%), Gaps = 13/494 (3%) Strand=Plus/Plus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167 ||| || || |||| || |||| ||| || | || | ||||||||||| || || Sbjct 207530 GTCGACAGTGAACTTGATCGCGTCTGCAGCGGCACGCGTTCTGAGATAATACATTCCAGT 207589 Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 ||| || ||| ||||||| |||| ||||| | ||||||||||| ||| | | || Sbjct 207590 CTTGAGTCCCTTCTTCCAAGCGTGGAAATGAAGAGACGTCAATTTGCCAAAGTTTGGATC 207649 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 ||||| ||||||||| || ||| || || || | ||||||| ||||| ||||| Sbjct 207650 AGACATGTGCACATTGAAAGATTGAGATTGGTCAATGTATGCTCCTCTGTCGGCAGCCAT 207709 Query 22288 ATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAA 22347 || | ||| ||| | || |||||||| ||||| || || | ||| ||| Sbjct 207710 ATCCACCAAGACACGTTGCTTGATCTCCCATACAGTCTTATAAAG------GCTCT-TAA 207762 Query 22348 CG--GTATCGA--TTCGATCCTCTGGACGGACCCGTTATTGTG-TATGATCAAATTTTTA 22402 | || | || || | | | || || ||||| | || | || ||| || Sbjct 207763 GGTTGTCTGGAATGTCCAAGTCCAGCACTGAGCCGTT-TGATGCCACCATTTCATTCTTC 207821 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 | | | | ||| | ||| | | |||||||| | | ||||| | ||||||||| Sbjct 207822 ACAGAGGCATCCCAAAGACCCAAGCTTGTCAAATCACTAAGAAGATGCTGATTCACCACT 207881 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 ||||| || || | || | | |||||||| || ||| | || ||||| | Sbjct 207882 GTGAACTCTCCTGAGAGAACTCTTCTGACATAAATGTTTGAAGTGTATGGCTCGAAGCAC 207941 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 |||||||| || || ||||| | || || || || ||||| || || | || | ||| Sbjct 207942 TCATTGTTCCCGAGAATCTGGGATGTTGATGCTGTTGGCATTGGTGCTACAAGCAAGGAG 208001 Query 22583 TTTCTCAAGCCGTG 22596 ||||| | ||||| Sbjct 208002 TTTCTGACACCGTG 208015 >seq634 Length=251403 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || || ||||| || || |||||| | || || || | || Sbjct 209421 ATGCAAATCTTTGTGAAAACACTCACAGGGAAGACCATCACCCTGGAGGTGGAGTCTTCT 209480 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| ||||| | || ||||||||| || | || || || ||| Sbjct 209481 GACACTATCGAAAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCTGATCAG 209540 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 |||||| | || |||||||| || ||||||||||| | | || ||| |||||||| Sbjct 209541 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGA-TGGGCGCACATTAGCAGATTATAA 209599 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| || || || | ||| |||| || Sbjct 209600 CATCCAAAAGGAGTCTACCTTGCATTTGGTCCT 209632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761496569600