Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq232 224 1e-53 seq457 201 1e-46 >seq232 Length=44964 Score = 224 bits (248), Expect = 1e-53 Identities = 408/589 (69%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 ||||| ||||| ||| || ||||| || | | || || ||||| || || || | | Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || || | || || |||||||| ||||| | |||| | ||| |||||||| ||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAA 11643 Query 33702 ATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33760 |||||||| || |||| | || |||| | || |||| | || ||||| | || Sbjct 11642 ATTCCTTCAAC-GCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGACTCAAT 11584 Query 33761 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 ||| || || |||||||| |||||||| || || || | || || ||||||| | Sbjct 11583 CCATCTCATG-GCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGA 11525 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33879 | || | ||| |||||| | ||| || | || || || | || ||||||||||| | Sbjct 11524 ACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCT 11465 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 | |||||| || |||||||| || || ||||| || ||| ||| ||||| | |||| Sbjct 11464 CGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATCT 11405 Query 33940 GCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 |||| || | |||||||| | | ||||| ||||| || || |||||| || |||| Sbjct 11404 GCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCAA 11345 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCA 34058 | || || | ||||| || |||| | | |||| || || | | | ||| | Sbjct 11344 AGAATGCAAGCACATGAGAGATGAAATGTCTCTCGT-TGTCATTCAATCCTTCCCAGTGC 11286 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 34118 ||||| ||| | ||| || ||||| ||||||| || || ||||||||||| || Sbjct 11285 TTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTG 11226 Query 34119 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 ||||| | |||||| |||| ||| | ||| ||||| | || |||| || Sbjct 11225 TACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 >seq457 Length=513114 Score = 201 bits (222), Expect = 1e-46 Identities = 594/908 (65%), Gaps = 12/908 (1%) Strand=Plus/Plus Query 62994 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63053 || || |||||||| | ||||| | || || || || || || ||||||||| |||| Sbjct 208542 ATGATTTCAGTGCACAAGTTACTGGATTTAATTGTGCCCAAGTTCTGTTGATTAGACTTT 208601 Query 63054 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63113 |||| | |||||| | || ||| | ||| | || || |||| |||| ||| | Sbjct 208602 CTGTTGGCAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGG 208661 Query 63114 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT----GTATCTCCTTTCTCTTTC 63169 || || ||| | | | ||||| || || || | | ||| | | | ||| Sbjct 208662 ATGGCAAACCAAAGCTGTTGGGCCTTGATG---GACTTACGAGCACGTCCCT-CGCGTTC 208717 Query 63170 GTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTC 63229 ||| ||| ||| ||| || | |||||||| | | | | | ||| ||| Sbjct 208718 ATATTTCAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGCTTC 208777 Query 63230 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63289 || ||||| | ||| ||||||||||| || | | || | || |||||||||||| || Sbjct 208778 ATTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGG 208837 Query 63290 AATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63348 ||||| | | | || || | |||||||| || ||| || || || |||||| Sbjct 208838 GATCCACA-ACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCTTCC 208896 Query 63349 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63408 | | || || | | | |||||||| ||||| || |||||||| ||||| | ||| Sbjct 208897 TCAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTC 208956 Query 63409 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63468 | | || ||||||||||| | ||||| || |||| ||| | || | | || Sbjct 208957 CTTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCA 209016 Query 63469 TTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAA 63528 | || | |||||| || || | ||||| || || ||||| ||| | || | | Sbjct 209017 TAGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGA 209076 Query 63529 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63588 ||||| || || ||||| || |||||||| | || ||||| | || || || | Sbjct 209077 TATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCA 209136 Query 63589 ACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63648 |||||||| |||||||| || ||||||| ||||| | | ||| || ||| | Sbjct 209137 GAGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAA 209196 Query 63649 TTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63708 || | || | ||| || ||||| || | || ||||| || ||||| |||||| | | Sbjct 209197 GCTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCT 209256 Query 63709 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACT 63767 ||| || || | ||| |||||||| |||| || ||| || | ||| || ||||| ||| Sbjct 209257 GAGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-TGGATTCCAACT 209315 Query 63768 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAG 63827 | || | ||| | ||||||||| || || || || | || | | | ||| Sbjct 209316 GAAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAA 209375 Query 63828 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63887 || || |||| |||||| ||||||||||| | ||| || || || ||||| | | Sbjct 209376 TATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTAATCGAAATCACGATCGTAGACA 209435 Query 63888 ATAACCGA 63895 || |||| Sbjct 209436 ATCTCCGA 209443 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353 || || |||||||||||| |||||||||||| || || |||| ||| || || | ||| Sbjct 80872 TGATACTCACCCACACGTCGTTCGAAAAAATTTGTCTTCCCTTGCAACGAAATCATATCC 80813 Query 33354 ATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAAT 33413 || ||||||||||||| | | || ||| || || | | | ||||| || | || Sbjct 80812 ATCCAATCAAACGGATTCGGAGTATGGTACATCTTCTCACACCCCAACGCAACCAACAGC 80753 Query 33414 CTATCTGCGACGAATTCTATATA 33436 ||||| || || || || ||||| Sbjct 80752 CTATCAGCCACAAACTCAATATA 80730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810672006400