Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq457 152 5e-32 seq232 134 1e-26 >seq457 Length=513114 Score = 152 bits (168), Expect = 5e-32 Identities = 358/538 (67%), Gaps = 2/538 (0%) Strand=Plus/Plus Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTC 38071 ||| || | || |||||| | ||| || | ||| || | ||| || |||||| | | | Sbjct 208811 TTCAACCCTTTGCATAAAGAGATCTGGGATCCACAACCC-GTAGAACAAATCTCTTGCCC 208869 Query 38072 TATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCC 38131 | |||||| || || |||||| || || || | ||||| ||||||||||||| Sbjct 208870 TCGCTTCTTCTTTGCCGTGATTCTTCCTCAATTCAAGCCAGTCGAAAATATCAGCGTGCC 208929 Query 38132 ATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATC 38191 | || || | || || | | |||||| ||| || | |||||||||| || ||||| Sbjct 208930 AAGGCTCCAAGTACATGGCAAACGCTCCTTTTCTCTTCCCCCCTCCCTGATCAACATATC 208989 Query 38192 TAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC 38251 | | |||| ||| | | | | ||||||||| |||||||| || | || ||| | | Sbjct 208990 TGGCCGTGTCATTGAACACACGGAGCATAGGTACAATACCATTCGAAGTTCCATTTGTTC 209049 Query 38252 CGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCAT 38311 | ||||||| ||| | |||| |||||| || |||| || || || |||||| Sbjct 209050 CACGAATATAAGAACCAGTCGCTCTGATATTATGCATAGACAGACCGATGCCCCCTGCAC 209109 Query 38312 GTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCT 38371 || || || |||| || | || | || ||| | || ||||| ||||| |||| || Sbjct 209110 TCTTGGAGATGCAAGCACACTCCTTCAGAGTGTCATAAATGCCTTCAATACTATCATTCT 209169 Query 38372 TTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATG 38431 | || | | ||| || ||| | ||||| |||||| ||||| || || | | Sbjct 209170 TCATGCAGATCAAAAAGCACGAAGAAAGCTGAGGGCGTGGAGTACCGGCATTGAACAGAG 209229 Query 38432 TAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT 38491 | ||||| ||||| |||||||| | | |||| | ||||| || || | ||| Sbjct 209230 TTGGAGAGGCATGCGTGAACCATCTCTGAGACAGCAGGTGGTATGTCTCAATGGCTGCAT 209289 Query 38492 CTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | |||| | ||| || || | || || ||||| ||||| || ||||| || || Sbjct 209290 CAATATTCTCCTTGTGGATTCCAACTGAAACTCTCATGAGCATGTGCTGTGGCCTCTC 209347 >seq232 Length=44964 Score = 134 bits (148), Expect = 1e-26 Identities = 357/543 (66%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 || || || ||||| ||||| || | || ||||| ||||| | ||| | || ||| Sbjct 11720 TCGTTGGAGAATGTCAATCCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAG 11661 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC-ATA 11790 || || || || ||||| ||||| || || || ||||| || | || ||| | | | Sbjct 11660 AAGGATCCGGAGAAGAAAATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAA 11601 Query 11791 TACCTTGTTGCTAGAT---ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTC 11847 | | ||| || |||||| | |||||||||| || ||||| || || | Sbjct 11600 GAA----TCGCTGGACTCAATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACCACTGG 11545 Query 11848 CATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATC 11907 | ||| || || || | || | | | ||||| | | ||| | | ||||| || Sbjct 11544 TACTGTCTCGATGGCATGGAACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTC 11485 Query 11908 TATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 | | | ||||||||| || ||||||||| || || || ||||| |||||||| || Sbjct 11484 AAGCAGGAGACTATACATCTCGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAA 11425 Query 11968 ACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTAC 12027 | || ||||||| ||| || ||| |||||| | || | |||||||||||||| Sbjct 11424 AGCTCTGGCCTCTGGGATCTGCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTAC 11365 Query 12028 AATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTT 12087 || |||||| | ||||| ||||| || | ||| || || | | | |||| | Sbjct 11364 GATGCCATCAGATGCAGCAAAGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTC 11305 Query 12088 AGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 | | ||| ||||| | | | ||| | | ||| || |||||| | ||||| || Sbjct 11304 ATTCAATCCTTCCCAGTGCTTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAA 11245 Query 12148 ACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAAC 12207 ||| ||| | || ||||||| |||||| |||| |||||| || ||||| | || Sbjct 11244 GGAAGCCTCTGCCTTCTTGTACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGAC 11185 Query 12208 GAA 12210 ||| Sbjct 11184 GAA 11182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519646227200