Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq232 217 2e-51 seq457 210 3e-49 >seq232 Length=44964 Score = 217 bits (240), Expect = 2e-51 Identities = 404/588 (69%), Gaps = 4/588 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 ||||| ||||| ||| || ||||| || | | || || |||||||| || || | | Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || || | || || |||||||| ||||| | |||| | || || ||||| || ||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGG-CACAGAAGGATCCGGAGAAGAA 11644 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 ||||||||| || || || |||| | || |||| | || | ||| | || Sbjct 11643 AATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGACTCAAT 11584 Query 36337 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 ||| || || |||||||| |||||||| || || || | |||||| || |||| | Sbjct 11583 CCATCTCATG-GCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGA 11525 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 | || | ||| |||||| | ||| || | ||||| |||| || ||||||||||| | Sbjct 11524 ACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCT 11465 Query 36456 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 36515 | |||||| || |||||||| ||||| ||||| || ||| ||| ||||| | |||| Sbjct 11464 CGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATCT 11405 Query 36516 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 36575 | || || | |||||||| | | ||||| ||||| || || || ||| || |||| Sbjct 11404 GCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCAA 11345 Query 36576 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCAT 36635 | || || | ||||| || |||| | | ||||| | | | | ||| | | Sbjct 11344 AGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTCATTCAATCCTTCCCAGTGCT 11285 Query 36636 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 36695 |||| ||| | ||| || ||||| ||||||| || || ||||||||||| || | Sbjct 11284 TGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGT 11225 Query 36696 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 |||| | |||||| |||| ||| | || || || | || |||| || Sbjct 11224 ACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 >seq457 Length=513114 Score = 210 bits (232), Expect = 3e-49 Identities = 597/909 (66%), Gaps = 10/909 (1%) Strand=Plus/Plus Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846 || || |||||||| | ||||| | || || || || || || ||||||||| |||| Sbjct 208542 ATGATTTCAGTGCACAAGTTACTGGATTTAATTGTGCCCAAGTTCTGTTGATTAGACTTT 208601 Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906 |||| | |||||| | || ||| | ||| | || || |||| |||| ||| | Sbjct 208602 CTGTTGGCAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGG 208661 Query 65907 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTCT--TTCG 65963 || || ||| | | | ||||| || || || | | | | ||| ||| Sbjct 208662 ATGGCAAACCAAAGCTGTTGGGCCTTGATG---GACTTACGAGCACGTCCCTCGCGTTCA 208718 Query 65964 TATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 66023 ||| ||| ||| ||| || | |||||||| | | | | ||||| |||| Sbjct 208719 TATTTCAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGCTTCA 208778 Query 66024 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 66083 | ||||| | ||| ||||||||||| || | | || | || |||||||||||| || Sbjct 208779 TTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGGG 208838 Query 66084 ATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 ||||| | | | || || |||||||| | || ||| || || || |||||| | Sbjct 208839 ATCCACA-ACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCTTCCT 208897 Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202 | || || | | | ||||||| ||||| || |||||||| ||||| | |||| Sbjct 208898 CAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCC 208957 Query 66203 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 66262 | || ||||||||||| | ||||| || |||| ||| | || | | ||| Sbjct 208958 TTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCAT 209017 Query 66263 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322 || | ||||||||| || || ||||| || || ||||| ||| | || | || Sbjct 209018 AGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGAT 209077 Query 66323 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 66382 |||| || || ||||| || |||||||| | || ||||| | || || || | Sbjct 209078 ATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCAG 209137 Query 66383 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 66442 || ||||| ||||| || |||||||||| | ||||| | | ||| || ||| | Sbjct 209138 AGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAAG 209197 Query 66443 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 66502 || | || ||| || ||||| || | || ||||| || ||||| |||||| | | Sbjct 209198 CTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCTG 209257 Query 66503 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTG 66561 ||| || || | ||| |||||||| |||| || ||| || | ||| || ||||| |||| Sbjct 209258 AGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-TGGATTCCAACTG 209316 Query 66562 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 66621 || | ||| | ||||||||| || || || |||| || | | | ||| | Sbjct 209317 AAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAAT 209376 Query 66622 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 66681 | || |||| |||||| ||||||||||| | ||| || || || ||||| | || Sbjct 209377 ATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTAATCGAAATCACGATCGTAGACAA 209436 Query 66682 TAACCGAGT 66690 | |||||| Sbjct 209437 TCTCCGAGT 209445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165560099200