Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq457 237 2e-57 seq232 221 2e-52 >seq457 Length=513114 Score = 237 bits (262), Expect = 2e-57 Identities = 605/910 (66%), Gaps = 12/910 (1%) Strand=Plus/Plus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || ||||||||||| | |||||| | ||||| || || || || ||||||||| |||| Sbjct 208542 ATGATTTCAGTGCACAAGTTACTGGATTTAATTGTGCCCAAGTTCTGTTGATTAGACTTT 208601 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 |||| | |||||| | || ||| | ||| | || || |||| |||| ||| | Sbjct 208602 CTGTTGGCAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGG 208661 Query 79786 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-ATCTCTTTTCTCT--TTCG 79842 || || ||| | | | ||||| || ||||| | | | | ||| ||| Sbjct 208662 ATGGCAAACCAAAGCTGTTGGGCCTTGATG---GACTTACGAGCACGTCCCTCGCGTTCA 208718 Query 79843 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCG 79902 |||| ||||||| ||| || | |||||||| ||| | | ||||| ||| Sbjct 208719 TATTTCAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGCTTCA 208778 Query 79903 TCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGA 79962 | ||||| | ||| ||||||||||| || | | || | || |||||||||||| || Sbjct 208779 TTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGGG 208838 Query 79963 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT-ATTCTTTT 80020 ||||| | | | || || | |||||| | || ||| || ||| | || |||||| Sbjct 208839 ATCCACA-ACCCGTAGAACAAATCTCTTGCCCTC-GCTTCTTCTTTGCCGTGATTCTTCC 208896 Query 80021 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 80080 | | || || | | | |||||||| ||||| || |||||||| ||||| | ||| Sbjct 208897 TCAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTC 208956 Query 80081 CCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 80140 | || || ||||||||||| | ||||| || |||| ||| | || | | || Sbjct 208957 CTTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCA 209016 Query 80141 TTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 80200 | || | ||||||||| || || ||||| || || ||||| ||| | || | | Sbjct 209017 TAGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGA 209076 Query 80201 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 80260 ||||| || || ||||| || |||||||| | || ||||| | || || || | Sbjct 209077 TATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCA 209136 Query 80261 ACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA 80320 || ||||| ||||| || || ||||||| ||||| | | ||| || ||| | Sbjct 209137 GAGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAA 209196 Query 80321 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 80380 || | || ||| || ||||| || | || ||||| || ||||| |||||| | | Sbjct 209197 GCTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCT 209256 Query 80381 CAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCATTGATGAATTCCTACC 80439 |||||| || | ||| |||||||| |||| || ||| || | ||| || ||||| || Sbjct 209257 GAGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-TGGATTCCAACT 209315 Query 80440 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 80499 | || | ||| | ||||||||| || || || |||| ||| | | | ||| Sbjct 209316 GAAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAA 209375 Query 80500 TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 80559 || || |||| |||||| ||||||||||| | ||| || || || ||||| | | Sbjct 209376 TATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTAATCGAAATCACGATCGTAGACA 209435 Query 80560 ATAACCGAGT 80569 || |||||| Sbjct 209436 ATCTCCGAGT 209445 >seq232 Length=44964 Score = 221 bits (244), Expect = 2e-52 Identities = 405/588 (69%), Gaps = 4/588 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 ||||| ||||| ||| || ||||| || | | || | |||||||| || || | | Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || || | || || |||||||| ||||| | |||| | || || || || || ||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGG-CACAGAAGGATCCGGAGAAGAA 11644 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 |||||||| || ||| || ||||| | || |||| | || ||||| | || Sbjct 11643 AATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGACTCAAT 11584 Query 50139 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 ||| || || |||||||| |||||||| || || || | || || ||||||| | Sbjct 11583 CCATCTCATG-GCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGA 11525 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 | || | ||| |||||| | ||| || | || || || | || ||||||||||| | Sbjct 11524 ACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCT 11465 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | |||||| || |||||||| || || ||||| || ||| ||| ||||| | |||| Sbjct 11464 CGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATCT 11405 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 |||| || | |||||||| | | ||||| ||||| || || || ||| || |||| Sbjct 11404 GCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCAA 11345 Query 50378 AAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCAT 50437 | || || | ||||| || |||||| | |||||| | | | | ||| | | Sbjct 11344 AGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTCATTCAATCCTTCCCAGTGCT 11285 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 |||| ||| | ||| || ||||| ||||||| || || ||||||||||| || | Sbjct 11284 TGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGT 11225 Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545 |||| | |||||| |||| ||| | ||| ||||| | || |||| || Sbjct 11224 ACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260899043200