Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq457 215 7e-51 seq232 190 3e-43 >seq457 Length=513114 Score = 215 bits (238), Expect = 7e-51 Identities = 600/907 (66%), Gaps = 10/907 (1%) Strand=Plus/Plus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 || ||||||||||| | ||||| | || || || || || || ||||||||| |||| Sbjct 208542 ATGATTTCAGTGCACAAGTTACTGGATTTAATTGTGCCCAAGTTCTGTTGATTAGACTTT 208601 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 |||| | |||||| | || || | ||| | || || |||| |||| ||| | Sbjct 208602 CTGTTGGCAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGG 208661 Query 71869 ATCGCTTTCCAGACGACTCGAGCCTTTATTATATT-CTTGTATCTCTTTTCTCTTTCGTA 71927 || || ||| | | | ||||| || || | | | || | | | ||| || Sbjct 208662 ATGGCAAACCAAAGCTGTTGGGCCTTGATGGACTTACGAGCACGTCCCT-CGCGTTCATA 208720 Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCAT 71986 || ||||||| ||| || | |||||||| ||| | | | | ||||| ||||| Sbjct 208721 TTTCAAATATAATTCTTCAAATTGTTCTCCCCA-GCAGTCGGCAAGACCAGGGGCTTCAT 208779 Query 71987 TCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAA 72046 | ||||| | ||| ||||||||||| || | | || | || |||||||||||| || | Sbjct 208780 TTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGGGA 208839 Query 72047 TCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT-ATTCTTTTT 72104 |||| | | | || || | |||||| | || ||| || ||| | || |||||| | Sbjct 208840 TCCACA-ACCCGTAGAACAAATCTCTTGCCCTC-GCTTCTTCTTTGCCGTGATTCTTCCT 208897 Query 72105 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 72164 | || || | | | |||||||| ||||| || |||||||| ||||| | |||| Sbjct 208898 CAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCC 208957 Query 72165 CGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 72224 | || ||||||||||| | ||||| || |||| ||| | || | | ||| Sbjct 208958 TTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCAT 209017 Query 72225 TGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 72284 || | ||||||||| || | ||||| || || ||||| ||| | || | || Sbjct 209018 AGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGAT 209077 Query 72285 ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 72344 ||| || || ||||| || |||||||| | || ||||| | || || || | Sbjct 209078 ATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCAG 209137 Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404 || ||||| ||||| || |||||||||| | ||||| | | ||| || ||| | Sbjct 209138 AGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAAG 209197 Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 || | || ||| || ||||| || | || ||||| || ||||| |||||| | | Sbjct 209198 CTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCTG 209257 Query 72465 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCATTGATGTATTCCTACCG 72523 |||||| || | ||| |||||||| |||| || ||| || | ||| || ||||| || | Sbjct 209258 AGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-TGGATTCCAACTG 209316 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 || | ||| | ||| ||||| || || || |||| ||| | | | ||| | Sbjct 209317 AAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAAT 209376 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 72643 | || |||| |||||| ||||||||||| | ||| || || || ||||| | || Sbjct 209377 ATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTAATCGAAATCACGATCGTAGACAA 209436 Query 72644 TAACCGA 72650 | |||| Sbjct 209437 TCTCCGA 209443 >seq232 Length=44964 Score = 190 bits (210), Expect = 3e-43 Identities = 398/588 (68%), Gaps = 4/588 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 ||||| ||||| ||| || |||||||| | | || || |||||||| || || | | Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || || | || || |||||||| ||||| | || | | || || ||||| || ||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGG-CACAGAAGGATCCGGAGAAGAA 11644 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 |||||||| || || || |||| | || |||| | || | ||| | || Sbjct 11643 AATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGACTCAAT 11584 Query 42244 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 ||| || || |||||||| |||||||| || || || | || || ||||||| | Sbjct 11583 CCATCTCATG-GCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGA 11525 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTT 42362 | || | ||| |||||| | ||| || | ||||| || | || ||||||||||| | Sbjct 11524 ACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCT 11465 Query 42363 CTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCT 42422 | |||||| || |||||||| || || ||||| || ||| ||||||||| | | || Sbjct 11464 CGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATCT 11405 Query 42423 GTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAA 42482 | || || | |||||||| | | ||||| || || || || || ||| || |||| Sbjct 11404 GCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCAA 11345 Query 42483 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCAT 42542 | || || | ||||| || |||| | | |||| | ||| | ||| | | Sbjct 11344 AGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTCATTCAATCCTTCCCAGTGCT 11285 Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 |||| ||| | ||| || ||||| | ||||| || || || |||||||| || | Sbjct 11284 TGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGT 11225 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT 42650 |||| | |||||| |||| ||| | || ||||| | || |||| || Sbjct 11224 ACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131817468800