Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq232 138 2e-27 seq457 98.7 1e-15 >seq232 Length=44964 Score = 138 bits (152), Expect = 2e-27 Identities = 384/580 (66%), Gaps = 12/580 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||| |||| |||| || |||||||||||||| ||||| |||| ||||| | Sbjct 11189 TGTTCCCGATCAAGTATAATGAAATCTGGGAAATGTACAAGAAGGCAGAGGCTTCCTTCT 11248 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | |||||||| |||||| ||| | | | ||||| | |||| || Sbjct 11249 GGACAGCTGAAGAGGTTGATCTGGGAGGAGACATCAAGCACTGGGA---AGGATTGAATG 11305 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | | ||| || | || || || || | | || |||||||| | || ||||| |||| Sbjct 11306 ACAACGAGAGACATTTCATCTCTCATGTGCTTGCATTCTTTGCTGCATCTGATGGCATCG 11365 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC- 125234 | || || ||| || | |||||| | | ||| || || ||||||| | || Sbjct 11366 TAAATGAGAATTTGGGGGTACGATTTTTGAAGGAGGTGCAGATCCCAGAGG-CCAGAGCT 11424 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 ||||| |||||||||||| |||||||| | || || ||||| | ||| || Sbjct 11425 TTTTATGGATTCCAAATCGCCATTGAGAATATTCATAGCGAGATGTATAGTCTCCTGCTT 11484 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTG 125354 || | ||||| ||||| || ||| ||| || | || ||||| || || Sbjct 11485 GAGACATACATCAAGGATCCTGTTGAAAAGAACAAGCTGTTCCATGCCATCGAGACAGTA 11544 Query 125355 CC-GTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 || || | | || ||||| | |||| || | ||||| ||| || ||| Sbjct 11545 CCAGTGGTGAAG-AAGAAGGCAGATTGGGCCATGAGATGGAT---TGAGTCCAGCGATTC 11600 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTT 125472 | ||| || || |||| ||||||||| ||| || || || ||||| | ||| | || Sbjct 11601 TTTCGCAGAGCGATTGGTTGCATTCGCCTGCGTTGAAGGAATTTTCTTCTCCGGATCCTT 11660 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 || ||||| | |||||||| ||||| || || | || ||| |||| | |||| Sbjct 11661 CTG-TGCCATTTACTGGCTCAAAAAGCGAGGGCTGCTTCCAGGATTGACATTCTCCAACG 11719 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||| || ||||| || ||||| || ||| || ||||| Sbjct 11720 AGTTGATCTCTCGTGATGAGGGGCTCCACACAGATTTTGC 11759 >seq457 Length=513114 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGC--TGATCGATATGGCTGCCGACAGAG 98097 || |||||||| |||||||| | | ||| | || | ||||||||||||||||||| Sbjct 207751 TATAAGACTGTATGGGAGAT--CAAGCAACGTGTCTTGGTGGATATGGCTGCCGACAGAG 207694 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 | | ||||||||||| |||||| |||||| || || | | || || | || | Sbjct 207693 GAGCATACATTGACCAATCTCAATCTTTCAATGTGCACATGTCTGATCCAAACTTTGGCA 207634 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 |||| || | || || |||| ||||| ||||| |||||||| || ||||| |||| Sbjct 207633 AATTGACGTCTCTTCATTTCCACGCTTGGAAGAAGGGACTCAAGACTGGAATGTATTATC 207574 Query 98218 TGAGAAC 98224 | ||||| Sbjct 207573 TCAGAAC 207567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741051048348800