Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq634 127 5e-24 seq429 127 5e-24 seq157 127 5e-24 seq221 123 6e-23 seq354 102 2e-16 >seq634 Length=251403 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | | || || | ||| || ||||| || || || || ||||| || Sbjct 209650 ATTCCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCT 209591 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || ||||| | || |||||||| ||||| | | ||| |||||||| Sbjct 209590 GCTAATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGT 209531 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||||||||| | || |||||||| | || || || || Sbjct 209530 GGAATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCC 209471 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || |||||||| ||||| || ||||| Sbjct 209470 ACCTCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq429 Length=364352 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||||| | | ||| || | ||||| || || || || || || ||||| || Sbjct 147041 ATCCCCCCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTGGATGTTATAATCC 146982 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || ||||| | || |||||||| ||||| | ||||| |||||||| Sbjct 146981 GCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTGCTGATCAGGT 146922 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||||||||||||||| | || ||||| || | ||||| | ||| Sbjct 146921 GGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGTATCAGATGACTCT 146862 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| || || || || ||||| || || |||||||| Sbjct 146861 ACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTGCAT 146812 >seq157 Length=134730 Score = 127 bits (140), Expect = 5e-24 Identities = 221/316 (70%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 238560 CAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTA 238619 ||||||||||| || |||| ||||| | |||||||| | || |||| ||||||| Sbjct 46283 CAGCTCGAGAGGGCAAAAACCCACGACGACTTATGGAATGCAGCACAGAAGGAAATGGTT 46224 Query 238620 A-GACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATG 238678 ||| || ||||||||| | ||| | || ||||||||||| || ||||| || ||||| Sbjct 46223 GTGACG-GGTAAAATGCATGGATTCCTGCGCATGTATTGGGCCAAGAAGATTCTGGAATG 46165 Query 238679 GACTAGATCTCCAAAGGAAGCTCTTAGA-TATAGTATTTATCTGAACGATAAATACGAAC 238737 ||| ||| ||| || |||| |||| ||| | || ||||||| |||| | Sbjct 46164 GACAGAATCCCCAGAGCAAGC-AATAGACTATGGCATCAGGTTGAACGACAAATGGCAGT 46106 Query 238738 TCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACG 238797 | || || ||||| || || || || ||| |||||||| || || ||| | || | Sbjct 46105 TGGATGGGCGTGATCCAAATGGCTATGTGGGTATCATGTGGTCCATGTGCGGAATCCATG 46046 Query 238798 ATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAA 238857 || || |||| || ||||| || || || || || | |||||||| ||| ||||| Sbjct 46045 ATCAGGGATGGCGCGAAAGACCCATTTTCGGGAAGATTCGTTACATGAACTATCAAGGAT 45986 Query 238858 CTAAGAAAAAATTTGA 238873 ||| |||||| || Sbjct 45985 GCAAGCGAAAATTCGA 45970 >seq221 Length=83180 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104344 CCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACC 104403 || ||| || | || | |||||| || ||||||||||| || || | | || | || Sbjct 43861 CCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCCAATGTACGCCC 43920 Query 104404 GTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTT 104463 || || || || || ||||| || || || ||||| |||||||| || || || || || Sbjct 43921 ATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGGATCCCCTCCTT 43980 Query 104464 ATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 ||||||||| || | || ||||| || | ||||| || || ||||| || || || Sbjct 43981 ATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACCTCGAGGGTTAT 44040 Query 104524 AGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| |||||||| || || |||||||| Sbjct 44041 GGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCAT 44076 >seq354 Length=2136 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| | | ||| || | || |||||||| || ||||| || || || || | Sbjct 1935 TCCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGC 1994 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 | || | || || || || || || |||||||| || || | ||| |||||||| || Sbjct 1995 CAACGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGG 2054 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| || ||||||||||| | || |||||||| | ||||| | ||||| Sbjct 2055 AATACCTTCCTTGTCCTGAATCTTCGACTTGACATTTTCAATTGTATCAGACGACTCTAC 2114 Query 104512 CTCTAGTGTAATAGTCTTACC 104532 ||| || || || ||||| || Sbjct 2115 CTCAAGCGTGATGGTCTTGCC 2135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151385417983040