Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq221 136 3e-27 seq634 109 5e-19 seq429 87.8 2e-12 seq354 82.4 6e-11 >seq221 Length=83180 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| ||||||| | ||| || || ||||| |||||| ||||| |||||||| ||| Sbjct 43850 CCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCC 43909 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 ||| ||| | ||||| |||||||| || || | || | | ||||||||| ||| Sbjct 43910 AATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGG 43969 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| ||| ||||||| ||||| | | | || ||||| | |||||| | Sbjct 43970 ATCCCCTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACC 44029 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 |||| |||||||| || || || || ||||| || ||||||||||| || Sbjct 44030 TCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCATGGT 44079 >seq634 Length=251403 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||| ||||| || ||| ||| | || |||| |||||| || || | Sbjct 209612 CTCCTTTTGGATGTTATAATCTGCTAATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAA 209553 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| |||||||||||||| || | | ||||||||| ||| || ||||| | Sbjct 209552 AATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTGTCCTGAATCTTAGACTTGACATT 209493 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | ||||||| ||| | || ||||| || || ||||| |||||||| Sbjct 209492 TTCGATAGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCAC 209433 Query 48715 AAAAATCTGCATC 48727 ||| || |||||| Sbjct 209432 AAAGATTTGCATC 209420 >seq429 Length=364352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||| ||||| |||| ||| | || |||| |||||| || || | Sbjct 147003 CTCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAA 146944 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||||||| || | | || || ||| ||| ||| ||||| | Sbjct 146943 AATCAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATT 146884 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || ||||| | ||||| || | || || ||||| || || || ||||| || Sbjct 146883 CTCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAAC 146824 Query 48715 AAAAATCTGCATCGTG 48730 ||||||||||||||| Sbjct 146823 GAAAATCTGCATCGTG 146808 >seq354 Length=2136 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| || || | ||| |||||| || ||||||||||| ||| Sbjct 1936 CCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCC 1995 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || ||| | ||||| |||||||| || | | || | |||||||||||| || Sbjct 1996 AACGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 2055 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| ||| ||| ||||| | | || ||||| | ||||| | Sbjct 2056 ATACCTTCCTTGTCCTGAATCTTCGACTTGACATTTTCAATTGTATCAGACGACTCTACC 2115 Query 48680 TCGACTGTTATGGTTTTACC 48699 || | || ||||| || || Sbjct 2116 TCAAGCGTGATGGTCTTGCC 2135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246682080880