Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq56 183 5e-42 seq160 122 1e-23 >seq56 Length=74040 Score = 183 bits (202), Expect = 5e-42 Identities = 185/241 (77%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| |||||||||||||||||||| |||||| ||||||| ||||| Sbjct 414 TCTGCGTGATAACATCCAGGGAATCACCAAGCCAGCTATTCGTCGTTTGGCTCGCCGTGG 473 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| ||||||||||| ||||||| |||| ||||| || | ||| | || Sbjct 474 AGGTGTGAAGCGTATCTCTGGATTGATCTATGAGGAGACTCGTGGAGTGCTCAAGGTGTT 533 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| |||| ||| ||||||| || ||| || ||||||||| | |||||||| Sbjct 534 CCTTGAGAACGTTGTCCGTGATGCTGTCACCTACACTGAGCACGCTCGCAGAAAGACTGT 593 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || || | ||| | |||||||| | || | || ||||| | | || ||||| || Sbjct 594 GACTGCCTTTGATGTGGTCTATGCTCTTAAGAGACAGGGCCGCACTTTGTACGGTTTCGG 653 Query 16693 A 16693 | Sbjct 654 A 654 >seq160 Length=268 Score = 122 bits (134), Expect = 1e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 16490 ATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 || |||||| ||||||| ||||| || || |||||| ||||||||||| ||||||| ||| Sbjct 268 ATTCGTCGTTTGGCTCGCCGTGGAGGTGTGAAGCGTATCTCTGGATTGATCTATGAGGAG 209 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | ||||| || | ||| | ||||| ||| |||| ||| ||| ||| || ||| || Sbjct 208 ACTCGTGGAGTGCTCAAGGTGTTCCTTGAGAACGTTGTCCGTGACGCTGTCACCTACACT 149 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||||||| | |||||||| || || | ||| | |||||||| | || | || Sbjct 148 GAGCACGCTCGCAGAAAGACTGTGACTGCCTTTGATGTGGTCTATGCTCTCAAGAGACAG 89 Query 16670 GGCCG 16674 ||||| Sbjct 88 GGCCG 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074395409840