Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq880 677 0.0 >seq880 Length=74269 Score = 677 bits (750), Expect = 0.0 Identities = 720/950 (76%), Gaps = 0/950 (0%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 || || |||||||| || ||||| || ||||| | || | ||||||||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACCT 135493 ||||| |||||||| | | || ||| || || | || || |||||||| ||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 135494 CCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAAC 135553 || || ||||| || || ||||| || |||||| ||||||| || | ||||| || ||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 135554 ATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCATC 135613 |||||||| ||||| ||| | || || ||||| || || | || ||||| || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 135614 TGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTC 135673 ||||||||||||||| | ||||||||| |||| || ||||||||||| ||| |||| || Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 135674 TTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGA 135733 | || ||| | | ||||| | |||||||||||||| ||||||||| | |||| ||| Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 135734 CTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCT 135793 | |||||||| || ||||| ||| ||||||||||| || ||||| || ||||| ||| Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 135794 GTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATT 135853 || ||| | | ||||| | || |||||||||||| |||||||||||| | || || Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 135854 TCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCT 135913 || || || || |||| ||||||||| ||||| || || |||||||| | ||||| || Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 135914 TTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGA 135973 ||||| ||||| || |||||||| || || |||||||| | ||||| |||||||| || Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 135974 TCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGT 136033 || ||||| || ||| | | ||||| || ||||| ||||| ||| | ||| Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 136034 TACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGT 136093 ||||| || |||||||||||||| ||||||||||| || ||||||||||||||||| ||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 136094 CGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCT 136153 ||| | ||||||||||| || || || |||||||||||||| ||||||| ||| | ||| Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 136154 GCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAAC 136213 |||||||| || || ||||| ||||| |||| | || | || || ||||| || ||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 136214 CTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACC 136273 | ||||| |||||||||||||| || ||||| ||| ||||||||||| ||||||| Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 136274 TGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGA 136323 ||||| ||| | | || |||||| | ||||| || || ||||| || Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGA 60375 Score = 592 bits (656), Expect = 2e-164 Identities = 734/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 137877 GATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTT 137936 ||||||||| || || ||||| || |||||||| ||||||||||| || || | || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTATTA 49574 Query 137937 CCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGG 137996 || ||||||||| || | ||||||||| | ||||| | || ||||||||| ||| Sbjct 49575 CCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATGG 49634 Query 137997 TACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTT 138056 || || || || || || ||| | | | ||||| ||||||| | ||||| || ||| Sbjct 49635 TATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTAACAGCTGCAGTT 49694 Query 138057 TCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 138116 || || ||||| || |||||||||||| | | || | ||||| || || | ||| Sbjct 49695 TCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACAA 49754 Query 138117 GGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGG 138176 || || | || |||| ||| | || || | ||||||||||| || | || || Sbjct 49755 GGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATGGT 49814 Query 138177 GCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCGTCTGGTAGGCATC 138236 | ||| | | ||||| || ||| | || || |||||||| | ||| ||| || Sbjct 49815 TCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAAATT 49874 Query 138237 CGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTG 138296 ||||| || ||||||||||| ||||| | || || || || ||||| || ||| | Sbjct 49875 CGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTCTTA 49934 Query 138297 ATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATC 138356 || |||||||| |||||||| | ||||||||||| || |||||||| || |||||| Sbjct 49935 ATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCAATC 49994 Query 138357 TTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATG 138416 |||||||| | | ||| | || ||||||||||||||||| | ||||| || |||||| Sbjct 49995 TTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCATATG 50054 Query 138417 ATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTA 138476 ||||| ||||| ||| || | |||| || | || |||||||| |||||||| || ||| Sbjct 50055 ATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACTGTA 50114 Query 138477 GAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACT 138536 ||||| || || | ||||||||| || ||||||| || |||||| | || ||| Sbjct 50115 GAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCAACT 50174 Query 138537 CAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGA 138596 |||| |||||||| ||||||||||| ||||| || |||| |||||| ||||| ||||| Sbjct 50175 CAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTGGT 50234 Query 138597 ATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGT 138656 | || ||| ||||| |||||| | || ||||||||| | ||||| || || | ||| Sbjct 50235 GTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGT 50294 Query 138657 CTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTC 138716 | |||| ||| ||||| | | ||| | ||| | ||| |||| || |||||||| Sbjct 50295 TTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCATATGATTTT 50354 Query 138717 GTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAA- 138775 ||||| |||||||||||||| || ||||||||||||||||| || ||||| || || || Sbjct 50355 GTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAAAAT 50414 Query 138776 CATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAA 138835 |||| | | |||||||| | || || ||||||||| || ||||| ||||| ||||| Sbjct 50415 CATT-TATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAA 50473 Query 138836 CTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 || || || || || || ||||| ||| | || |||||||| Sbjct 50474 ATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627961092352000