Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq880 571 2e-158 >seq880 Length=74269 Score = 571 bits (632), Expect = 2e-158 Identities = 719/985 (73%), Gaps = 2/985 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||||||||||| || || || || ||||| | || | ||||||||||| ||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| || || |||| ||||| || || |||| |||||||| || || Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || ||||| ||||| || |||||||| ||||| || || ||| | ||||| ||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || || || || || || ||||||| || || || || || | || || || || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | ||||||||||||||||||||||||| ||||| || ||| | ||||| Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | || ||||| |||| ||| | ||| ||| | |||||||| |||||| | | Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 ||||| ||| | |||||||| || || || |||||||| | | |||||| ||| Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 19710 GTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATC 19769 || || || |||||||| | || ||||| ||| |||||||||||| | |||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 19770 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 19829 || ||||| || ||||| ||| | ||||||||||| || ||||| ||| | ||||| || Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 19830 TTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 19889 ||||| ||| | ||||||||||| ||||| ||||| || | ||||| ||||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 19890 AGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGC 19949 | || ||||| || | ||| ||||| ||||| | | ||| ||| | || Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 19950 TATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 20009 || || || || ||||| ||||| || || || || || ||||| || || |||||||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 20010 AGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCT 20069 | || || || ||||| ||||| || || || |||||||| ||||| ||||| | ||| Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 20070 ACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAAC 20129 ||| || || ||||| || ||| | || | | || || | |||||||| || ||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 20130 CTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCA-ACGGAAAGATAATCCCAAC 20188 | |||||||| ||||| ||||| ||||| || ||| ||| | || ||||| || Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGAT-TCACAAGGTCGTGTAATCAACAC 60426 Query 20189 ATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGC 20248 ||||||||| | | || | |||||| | || ||||||| ||||| || | ||||| Sbjct 60425 TTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGC 60366 Query 20249 TCATAACTTCCCACTTGATTTAGCT 20273 ||| ||||| ||||||||||||||| Sbjct 60365 TCACAACTTTCCACTTGATTTAGCT 60341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440090585280