Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq880 773 0.0 seq814 187 4e-42 >seq880 Length=74269 Score = 773 bits (856), Expect = 0.0 Identities = 736/941 (78%), Gaps = 0/941 (0%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||||||||| | |||||||| ||| || ||||||| ||| || ||| | Sbjct 61282 GGTTGGTTTGGTGTATTAATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATC 61223 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 ||||| ||||| || ||||| ||||||||||| || |||||||| || || |||||||| Sbjct 61222 GCATTTATCGCTGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCA 61163 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 || | || ||||||||||||||||| ||||| ||||||||| |||||||||| || ||| Sbjct 61162 TTATTATACGGTAACAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGT 61103 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 ||||| ||||| || ||||||||||| || || | ||||||||| | ||||| |||||| Sbjct 61102 TTACATTTCTACCCAATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGT 61043 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| || || | | || ||| | | || | | | |||||||| | || Sbjct 61042 CCTTACCAATTAGTTGTATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAG 60983 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 |||||| | || | |||||||||||||||||| |||||| ||||||||| |||||||| Sbjct 60982 TGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCA 60923 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 || | |||||| ||||||||| | |||||||| ||||||| ||||| ||||| || Sbjct 60922 GTTGCTGCAGCTACAGCTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGAT 60863 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 |||||||| |||||||| ||||| ||||||||||||||| | ||||||||||| || || Sbjct 60862 GGTATGCCATTAGGTATCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCAC 60803 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 |||||| | |||||||||||||||||| ||||||||| ||| | || ||||| ||||| Sbjct 60802 AACATCTTAATGCACCCATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 60743 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTA 212211 ||||| |||||||||||||| ||||| || |||||| | ||||||||||| |||| Sbjct 60742 TTCTCAGCTATGCACGGTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAAC 60683 Query 212212 GATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCT 212271 || ||| ||| | |||||||| || || ||||||||||| || || |||||||| ||| Sbjct 60682 GAATCAGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 60623 Query 212272 GCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGT 212331 || ||||| ||||| ||| | | |||||||| || || ||||| |||||| | Sbjct 60622 GCTCATGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCA 60563 Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 |||||||||||| | || | ||||| || | || | ||||| || || | ||||| Sbjct 60562 TTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATT 60503 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 | || |||||||| ||| ||||||| ||||||||||||||||||||||| ||| || | Sbjct 60502 TCAACTATGGCATTTAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 60443 Query 212452 GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTT 212511 ||| || | ||||||| |||| || ||||| | || ||| | ||||| ||||| Sbjct 60442 GGTCGTGTAATCAACACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTA 60383 Query 212512 ATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||| ||||||||||| |||||||| |||||||| ||||| Sbjct 60382 ATGCATGAAAGAAATGCTCACAACTTTCCACTTGATTTAGC 60342 >seq814 Length=161544 Score = 187 bits (206), Expect = 4e-42 Identities = 377/553 (68%), Gaps = 10/553 (2%) Strand=Plus/Minus Query 193647 GAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTAT 193706 ||||| || || | ||||| || |||||||| || ||||| || ||||||||| Sbjct 132769 GAGATTTACAACTTGGGTGCCCAGAGTCATGTGGGGGTGTCCTTCCAGTGCCCAGAGTAT 132710 Query 193707 ACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGA 193766 ||| || |||| |||||| | || | ||| | | || || | | || ||||| Sbjct 132709 ACTGCTGATGTCGATGCTCTTGGGGTGTTGAGAGTGTTGGAGGCCATCAGAATTTTGGGT 132650 Query 193767 ATGGAGAAAGATGTTCGCA---TCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTT 193823 |||||||| || || ||| | |||||||| || ||| || |||| ||| || Sbjct 132649 ATGGAGAA-GAAGT--GCAAGTTTTATCAGGCTTCCACCTCTGAGCTGTTTGGAAAGGTG 132593 Query 193824 CTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCA 193883 | | | ||| | | | |||||||| || ||||||| || || |||| | |||| Sbjct 132592 CAGGAGATTCCCCAAAAGGTGACCACACCTTTCTATCCACGTTCGCCATATGCGGCAGCA 132533 Query 193884 AAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGT 193943 ||| ||| || || ||||||| | || ||| | ||||| || || | || | Sbjct 132532 AAGCTGTTCGGGTACTGGATCACCGTCAACTATAGAGAGTCGTACGGTATGTTTGCCTGC 132473 Query 193944 TCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAG 194003 |||||| || ||||| ||||| || || ||||||||||||||||| || | ||| Sbjct 132472 AATGGTATCCTGTTCAACCACGAGTCCCCTCTGAGAGGTGAGACATTTGTGACAAGGAAG 132413 Query 194004 ATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTAT-CTTGGTAA 194062 || |||| |||| | | | |||| | ||| || || ||| | | | ||||| || Sbjct 132412 ATCACACGAGGTCTGGCAAGGATCAAGGCTGGTTTG--GATGATGCACTGTACTTGGGAA 132355 Query 194063 -TCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAA 194121 ||| |||| ||||| |||||||| || || |||||||| || || | |||| | | Sbjct 132354 ATCTCGATGCGAAGAGAGATTGGGGGCATGCGAAGGATTACGTCGAGATGCAGTGGCTGA 132295 Query 194122 TGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTA 194181 || | || ||||||||||| | |||||||||||||| || || || ||| | |||| Sbjct 132294 TGCTCCAGCAGGATGAACCAAAGGATTATGTGATTGCAACTGGAGAGCAGCACAGTGTTC 132235 Query 194182 GAGACTTTGTGAA 194194 | || ||||| || Sbjct 132234 GTGAATTTGTCAA 132222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807546316892800