Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq880 758 0.0 >seq880 Length=74269 Score = 758 bits (840), Expect = 0.0 Identities = 764/988 (77%), Gaps = 10/988 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 ||||||||||||||||| |||||| || || | ||| | |||||||||||||| ||| Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| ||| ||||||| || | ||||| | ||||| |||||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| |||||||| || ||| | || || ||| | ||||| || ||||| ||||||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 |||||||| ||||| || |||||| |||||||||| || || ||||| ||||| || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || || | || |||||||| |||||||| ||||||||||| |||||| | Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | || ||| | | || | | | | ||||||||| | |||||||| |||| | | | Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 |||| ||| | || ||||| ||| || ||||||||||| || ||||||| || Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 |||||| | | || ||| ||||||| ||||| |||||||||||||||||| |||||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 |||||||| |||||||||||| | || |||||||| || |||||||| |||||||||| Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 171265 ||||||||| |||||| || ||| | || |||||| | ||| || ||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 171266 TCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAA--AACTACG 171323 || || || || ||||| ||||| | || || ||||| ||||| ||| ||| | | Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAA--TCAGCTAACGAAG 60667 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || || || || |||||||||||||| || ||||| || ||||||||||| ||||| | Sbjct 60666 GTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTG 60607 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 || | ||||||||||| || || ||||| ||||||||||||||||||||||||||| | | Sbjct 60606 GTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAG 60547 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 ||| | || ||||| || | ||||| || || | ||||| | || |||||||| | Sbjct 60546 CTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 60487 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT-ACCA 171562 || | || || ||||||||||||||||||||||||||| || | || ||| | || Sbjct 60486 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGG---TCGTGTAATCA 60430 Query 171563 ACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 ||| |||| ||| || ||||| | || ||| | || || ||||| ||||||||||||| Sbjct 60429 ACACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAA 60370 Query 171621 ATGCACACAACTTCCCACTAGACCTAGC 171648 |||| |||||||| ||||| || |||| Sbjct 60369 ATGCTCACAACTTTCCACTTGATTTAGC 60342 Score = 522 bits (578), Expect = 3e-143 Identities = 744/1041 (71%), Gaps = 27/1041 (3%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 || ||| || ||||||| ||| | | |||||||||||||| | || ||||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT 49562 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 | ||| | |||||||||||||| ||||| | || || ||||| |||| ||| || Sbjct 49563 TTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTT 49622 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||||||| ||||||||| | || || |||| | | || || || || ||| Sbjct 49623 GTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTA 49682 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || ||||||| || |||||||||| |||| || ||||||| Sbjct 49683 ACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGC 49742 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 || || |||||||| || || || |||| |||||||||||| |||||| ||||| Sbjct 49743 CCAGAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTT 49802 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 ||||||||||| |||| | || ||||| ||| | | || |||||||||||| | Sbjct 49803 GCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT 49862 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 || || ||||| || |||||| | || ||||||||| |||||||| ||| Sbjct 49863 TCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTC-GT 49921 Query 172215 AGCATCTTTC-TAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGG 172273 | || |||| |||| ||||| |||||||| | | |||||||| ||||| ||||| Sbjct 49922 ATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGG 49981 Query 172274 TGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAA 172333 ||| || |||||||| || | ||| ||||| | || |||||||| || ||| | || Sbjct 49982 TGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAA 50041 Query 172334 TCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACA 172393 ||||| ||||||||||||||||| ||| | | |||| ||| ||||||||||| || || Sbjct 50042 CCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCA 50101 Query 172394 TGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGAT 172453 ||||||||| ||| | |||||||| | |||||| || | | | | Sbjct 50102 TGGTGCAACTGTAGAAAACACATTATTTGAAGA---------------TG--GTGATGGT 50144 Query 172454 TCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGAT 172513 ||| |||| ||| | ||||| | || || || | |||||||| ||| ||| | Sbjct 50145 GCAA-ATACA---TTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGT 50200 Query 172514 TACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTT 172573 ||||| || | ||||||||||| || |||||| ||||||||||||| ||| | | || Sbjct 50201 AACTGCGAATCGTTTCTGGTCACAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTT 50260 Query 172574 ACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 172633 ||| ||| ||||||| || ||||| || | ||| | |||| | || || | || Sbjct 50261 ACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCAATTGGCGTAGT 50320 Query 172634 AGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 172693 |||| | || | ||| | | ||||| || |||||||||||||| || | || || || Sbjct 50321 AGGTTTAGCTTTAAACTTACGTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGA 50380 Query 172694 AGACCCAGAGTTTGAAACCTTCTACACTAAGAA-CATTCTTCTTA-ATGAAGGTATGAGA 172751 ||| || || || ||||| ||||| || || || ||| || ||| |||||||| | || Sbjct 50381 AGATCCTGAATTCGAAACTTTCTATACAAAAAATCAT--TTATTAGATGAAGGTGTTCGA 50438 Query 172752 GCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTG 172811 || |||||| | || ||||| || ||||| || || || |||||||| || || || Sbjct 50439 GCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTA 50498 Query 172812 CCACGAGGCAACGCACTATAA 172832 ||||| || ||||| || ||| Sbjct 50499 CCACGTGGAAACGCTCTTTAA 50519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570262527043200