Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq232 221 2e-52 seq457 196 6e-45 >seq232 Length=44964 Score = 221 bits (244), Expect = 2e-52 Identities = 407/589 (69%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 ||||| ||||| ||| || ||||| || | | || | |||||||| || || | | Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || || | || || |||||||| ||||| | |||| | ||| ||||| || ||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAA 11643 Query 33424 ATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33482 |||||||| || |||| | || |||| | || |||| | || ||||| | || Sbjct 11642 ATTCCTTCAAC-GCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGACTCAAT 11584 Query 33483 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 ||| || || |||||||| |||||||| || || || | || || ||||||| | Sbjct 11583 CCATCTCATG-GCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGA 11525 Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601 | || | ||| |||||| | ||| || | || || || | || ||||||||||| | Sbjct 11524 ACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCT 11465 Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33661 | |||||| || |||||||| || || ||||| || ||| ||| ||||| | |||| Sbjct 11464 CGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATCT 11405 Query 33662 GTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33721 | || || | |||||||| || ||||||| ||||| || || || ||| || |||| Sbjct 11404 GCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCAA 11345 Query 33722 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCA 33780 | || || | ||||| || |||| | | |||| || || | | | ||| | Sbjct 11344 AGAATGCAAGCACATGAGAGATGAAATGTCTCTCGT-TGTCATTCAATCCTTCCCAGTGC 11286 Query 33781 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33840 ||||| ||| | ||| || ||||| ||||||| || || ||||||||||| || Sbjct 11285 TTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTG 11226 Query 33841 TACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTAT 33889 ||||| | |||||| |||| ||| | ||| ||||| | || |||| || Sbjct 11225 TACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 >seq457 Length=513114 Score = 196 bits (216), Expect = 6e-45 Identities = 594/910 (65%), Gaps = 12/910 (1%) Strand=Plus/Plus Query 62943 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63002 || || |||||||| | ||||| | || || || || || || ||||||||| |||| Sbjct 208542 ATGATTTCAGTGCACAAGTTACTGGATTTAATTGTGCCCAAGTTCTGTTGATTAGACTTT 208601 Query 63003 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63062 |||| | |||||| | || ||| | ||| | || || |||| |||| ||| | Sbjct 208602 CTGTTGGCAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGG 208661 Query 63063 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT----GTATCTCCTTTCTCTTTC 63118 || || ||| | | | ||||| || || || | | ||| | | | ||| Sbjct 208662 ATGGCAAACCAAAGCTGTTGGGCCTTGATG---GACTTACGAGCACGTCCCT-CGCGTTC 208717 Query 63119 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 63178 ||| ||| ||| ||| || | |||||||| | | | | ||||| ||| Sbjct 208718 ATATTTCAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGCTTC 208777 Query 63179 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63238 || ||||| | ||| ||||||||||| || | | || | || |||||||||||| || Sbjct 208778 ATTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGG 208837 Query 63239 AATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63297 ||||| | | | || || | |||||| | || ||| || || || |||||| Sbjct 208838 GATCCACA-ACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCTTCC 208896 Query 63298 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63357 | | || || | | | |||||||| ||||| || |||||||| ||||| | ||| Sbjct 208897 TCAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTC 208956 Query 63358 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63417 | | || ||||||||||| | ||||| || |||| ||| | || | | || Sbjct 208957 CTTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCA 209016 Query 63418 TTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAA 63477 | || | |||||| || || | ||||| || || ||||| ||| | || | | Sbjct 209017 TAGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGA 209076 Query 63478 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63537 ||||| || || ||||| || |||||||| | || ||||| | || || || | Sbjct 209077 TATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCA 209136 Query 63538 ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63597 |||||||| || || || || ||||||| ||||| | | ||| || ||| | Sbjct 209137 GAGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAA 209196 Query 63598 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63657 || | || ||| || ||||| || | || ||||| || ||||| |||||| | | Sbjct 209197 GCTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCT 209256 Query 63658 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACT 63716 ||| || || | ||| |||||||| |||| || ||| || | ||| || ||||| ||| Sbjct 209257 GAGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-TGGATTCCAACT 209315 Query 63717 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 63776 | || | ||| | ||||||||| || || || |||| || | | | ||| Sbjct 209316 GAAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAA 209375 Query 63777 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63836 || || |||| |||||| ||||||||||| | ||| || || || ||||| | | Sbjct 209376 TATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTAATCGAAATCACGATCGTAGACA 209435 Query 63837 ATAACCGAGT 63846 || |||||| Sbjct 209436 ATCTCCGAGT 209445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940347580800