Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq457 259 1e-63 seq32 161 3e-34 seq232 127 5e-24 >seq457 Length=513114 Score = 259 bits (286), Expect = 1e-63 Identities = 591/881 (67%), Gaps = 14/881 (2%) Strand=Plus/Minus Query 363431 TCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCC 363490 |||||||| | | || || | || ||||| ||| | ||| | ||| | |||| |||| Sbjct 209364 TCAATGGTCGTGTCGTGGAGAGGCCACAGCACATGCTCATGAGAGTTTCAGTTGGAATCC 209305 Query 363491 ATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTA 363546 | | || ||||||| || ||||| ||||| | || ||| || | | || Sbjct 209304 ACAAGGAGAATATTGATGCAGCCATTGAGACATACCACCTGCTGTCTCAGAGATGGT--- 209248 Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||| ||| | ||||| ||| |||||| || |||| || ||| | ||||| Sbjct 209247 -TCACGCATGCCTCTCCAACTCTGTTCAATGCCGGTACTCCACGCCCTCAGCTTTCTTCG 209189 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||| | | |||||| | ||| || || || || | |||||| || ||| | Sbjct 209188 TGCTTTTTGATCTGCATGAAGAATGATAGTATTGAAGGCATTTATGACACTCTGAAGGAG 209129 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| || ||||||| |||||| || || ||| | || || || ||| | | || Sbjct 209128 TGTGCTTGCATCTCCAAGAGTGCAGGGGGCATCGGTCTGTCTATGCATAATATCAGAGCG 209069 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | ||| ||||| || ||| ||| |||||||| | || || ||||| || Sbjct 209068 ACTGGTTC-TTATATTCGTGGAACAAATGGAACTTCGAATGGTATTGTACCTATGCTCCG 209010 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 |||||| | | || || || || || || ||||| || || ||| | ||||| ||||| Sbjct 209009 TGTGTTCAATGACACGGCCAGATATGTTGATCAGGGAGGGGGGAAGAGAAAAGGAGCGTT 208950 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| ||||| | |||||| || || |||||||| || | ||||| | |||| || Sbjct 208949 TGCCATGTACTTGGAGCCTTGGCACGCTGATATTTTCGACTGGCTTGAATTGAGGAAGAA 208890 Query 363906 -CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 ||||| ||| || ||| | | ||| | ||| ||||||| | | ||| | | || | Sbjct 208889 TCACGGCAAA-GAAGAAGCGAGGGCAAGAGATTTGTTCTACGGGTTGTGGATCCCAGATC 208831 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGT 364023 |||||| | | || || || || | || | ||||| | ||||| ||| | ||| Sbjct 208830 TCTTTATGCAAAGGGTTGAAGCTGG-AGGAGAGTGGTCCTTGTTTTGTCCAAATGAAGCC 208772 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || |||||| |||| ||||| || | | || | |||| || |||||| Sbjct 208771 CCTGGTCTTGCCGACTGCTGGGGAGAACAATTTGAAGAATTATATTTGAAATATGAACGC 208712 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 |||||| ||||||||| | || || || |||| |||||||||||| | || | Sbjct 208711 GAGGGACGTGCTCGTAAGTCCATCAAGGCCCAACAGCTTTGGTTTGCCATCCTCGAAGCT 208652 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || ||||||| |||| || || ||| | | ||| ||||| |||| | ||||| || Sbjct 208651 CAAGTTGAGACGGGAAATCCTTACATGCTCTTCAAGGATTCTGCCAACAGAAAGTCTAAT 208592 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||| || | || |||||| | || ||| | || || || || ||||| ||||| Sbjct 208591 CAACAGAACTTGGGCACAATTAAATCCAGTAACTTGTGCACTGAAATCATTGAGTACACA 208532 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 || || || ||||| || || |||||||| || || || Sbjct 208531 AGCCCGGATGAAACTGCAGTGTGCAACCTTGCATCCATTGC 208491 >seq32 Length=101482 Score = 161 bits (178), Expect = 3e-34 Identities = 357/526 (68%), Gaps = 12/526 (2%) Strand=Plus/Minus Query 111278 ATTTGGAGAAACAATGCGTTTTAATCTGTCAACTCATTTTCCACTTCTCACAACAAAGCG 111337 ||||||| | || ||||| || ||| || | ||||| || ||||| |||||||| Sbjct 37129 ATTTGGAAAGACGATGCGATTCAATTTGCGGCATACATTTCCTCTCCTCACCACAAAGCG 37070 Query 111338 AACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGC 111397 | ||||| || | | ||||| || || |||||||| |||||||| ||||| Sbjct 37069 TGTCTTTTGGAGAGGGCTGGCAGAAGAGCTCCTCTGGTTTATCAAAGGAAGTACCAATGC 37010 Query 111398 AAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCT 111457 | ||| | ||| ||| | | ||||||||||||||||| || ||||| | ||| Sbjct 37009 GACAGAATTATCAGACAAAGGAATCCATATTTGGGATGGAAATGGCTCTCGTGAATATCT 36950 Query 111458 AGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCA 111517 ||||| |||| || || | || || || ||||| || ||||| || || ||||| Sbjct 36949 TGATTCGATTGGCCTCACAGAGAGGGAGGAGGGGGATCTTGGGCCAGTGTATGGGTTTCA 36890 Query 111518 ATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA---CGACTCATATGATTCACAGGG 111574 ||||| |||||||||||||| || || |||| | ||||| || | || |||| Sbjct 36889 GTGGCGTCACTTTGGTGCAGAGTATTCAAACATGTATGCCGACT-AT-TCCGGCAAAGGG 36832 Query 111575 AACTGATCAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCAT 111634 | |||||| | | || ||||| || |||| ||||| ||||| | | | ||| | Sbjct 36831 GTC-GATCAACTCAATGATCTCATTCATAAAATCAAGAATAACCCCAATGACAGGCGCTT 36773 Query 111635 TATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCT 111694 | | | || ||||| ||| || | | | ||||| || ||||||||||| | Sbjct 36772 GGTGCTAACCGCGTGGAATCCATTGGCTCTTCCAGAGATGGCTCTACCACCATGTCACAT 36713 Query 111695 TATGTGCCAGTTTTATGTACACGACGGGATGCTTTCA--TGCCAAATGTATCAGCGATC- 111751 | || ||||| || || || ||| | || | || ||||||||||||||||| Sbjct 36712 GTTTTGTCAGTTCTACGTTGCTGATGGG--GAATTGAGCTGTCAAATGTATCAGCGATCG 36655 Query 111752 TGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCA 111797 ||| || | || || ||||| || |||||||| ||| |||||| Sbjct 36654 TGC-GACTTGGGACTCGGTGTACCATTTAATATAGCATCGTACGCA 36610 >seq232 Length=44964 Score = 127 bits (140), Expect = 5e-24 Identities = 356/537 (66%), Gaps = 17/537 (3%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| ||| |||||| | || || ||| ||||| || Sbjct 11554 AAGAAGAAGGCAGATTGGGCCATGAGATGGATTGAGTCCAGCGA---TTCTTTCGCAGAG 11610 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || | ||||||| || |||||||| |||||||| || ||| | || ||||| || Sbjct 11611 CGATTGGTTGCATTCGCCTGCGTTGAAGGAATTTTCTTCTCCGGATCCTTCTGTGCCATT 11670 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 | ||||| ||||| || | | | || || | || || || || ||||| || Sbjct 11671 TACTGGCTCAAAAAGCGAGGGCTGCTTCCAGGATTGACATTCTCCAACGAGTTGATCTCT 11730 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATA--TCATTC 22669 || |||||||| || || || |||||||| |||| ||| | || | ||| Sbjct 11731 CGTGATGAGGGGCTCCACACAGATTTTGC----ATGCCTCATCT-ACTCCTTGCTCAACA 11785 Query 22670 ATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTC 22729 | || || | || | | ||||| | || || || |||||| | || Sbjct 11786 ACAAGCTCAGCAAGGAGAGAATCGCAGATATCGTGACGAACGCCGTTGAATTAGAGAAGG 11845 Query 22730 TATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC-GAATCAATGAGT 22788 ||||||||||| || | || || || || || || || || | ||| || Sbjct 11846 AGTTTATTTGCGACGCCCTGCCTGTCGACCTGATCGGCATGAACGCGAGGCTCA-TGTC- 11903 Query 22789 ACA-TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847 ||| || ||| ||||||| || ||| | || | || | || || ||| ||| || Sbjct 11904 ACAGTACATTGAATTTGTAGCTGATAGACTTCTGGTTGCCCTGGGGAATGACAAGGTGTA 11963 Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907 || || | |||||||| || ||||||||||| ||||| | | |||||||| ||||| Sbjct 11964 CAATGTTGCCAATCCATTCGATTGGATGGAACTGATTTCTTTGCAGGGAAAGACAAATTT 12023 Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATGA 22964 |||||| || |||||||| || |||||||| || || || ||| || | ||| ||| Sbjct 12024 CTTCGAGAAGAGAGTTGGCGAGTACCAAAAGGCTGGAGTGATGAATTCGATGACTGA 12080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303338904688160