Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq634 100 2e-16 seq429 82.4 7e-11 seq221 82.4 7e-11 >seq634 Length=251403 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | || || || | || ||| | || || ||| | Sbjct 209421 ATGCAAATCTTTGTGAAAACACTCACAGGGAAGACCATCACCCTGGAGGTGGAGTCTTCT 209480 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| ||||| || || || || || ||||| Sbjct 209481 GACACTATCGAAAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCTGATCAG 209540 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | |||||| || || ||||| | ||||||| | | | | ||| |||||||| Sbjct 209541 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCA-CATTAGCAGATTATAA 209599 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| || ||||| | ||||| || | | |||||||||||| Sbjct 209600 CATCCAAAAGGAGTCTACCTTGCATTTGGTCCTCCGTTTGAGAGGAGGA 209648 >seq429 Length=364352 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || |||||| | ||||| | ||||| ||| | Sbjct 146812 ATGCAGATTTTCGTTAAAACCCTGACGGGAAAAACTATTACTCTGGAAGTAGAGTCATCT 146871 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | ||||| |||||| || ||||| || || || || ||||| Sbjct 146872 GATACGATTGAGAATGTCAAGTCGAAGATTCAGGATAAAGAGGGGATCCCACCTGATCAG 146931 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| || || ||||| | ||||||| | | | | ||||||||| Sbjct 146932 CAGAGATTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACCCTGGCGGATTATAAC 146991 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGATT 24229 || ||||| || || || | || || || | | ||| |||| || || |||||| Sbjct 146992 ATCCAAAAGGAGTCAACGTTACACTTGGTTCTTCGCTTGCGAGGGGG--GATGATGATT 147048 >seq221 Length=83180 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || |||||| | ||||| || | || ||| |||| |||||| | Sbjct 44076 ATGCAGATTTTCGTCAAAACACTGACTGGGAAGACCATAACCCTCGAGGTCGAGTCTTCA 44017 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | ||||| || ||| || || || || || || || ||||| Sbjct 44016 GATACGATTGAGAATGTCAAGTCGAAAATTCAGGATAAGGAGGGGATCCCGCCTGATCAG 43957 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||||||||| | || || ||||| || || |||| | || | || ||||| || Sbjct 43956 CAGAGACTGATCTTCGCTGGGAAGCAGCTTGAGGATGGGCG-TACATTGGCAGATTACAA 43898 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || || |||||| | || || ||| | | ||| | |||||| Sbjct 43897 TATTCAGAAGGAGTCTACACTGCACTTGGTGCTTCGGTTGCGTGGAGGA 43849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931388936400